aeb3e20385
Merge pull request #2307 from Vsevak/zbl_reduce_declaration
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Fix NaN in GPU-accelerated Tersoff styles with OpenCL backend
2020-08-26 13:56:49 -04:00
629ead6348
Merge pull request #2309 from lammps/doxygen-integration
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Add doxygen and graphviz processing into the documentation build
2020-08-26 13:05:00 -04:00
94db627ba5
fix formatting issue
2020-08-26 12:09:43 -04:00
b4403de026
add false positive
2020-08-26 12:09:35 -04:00
8137ada848
Merge branch 'collected-small-changes' into doxygen-integration
2020-08-26 11:51:45 -04:00
bdc952ac88
Merge branch 'master' into collected-small-changes
2020-08-26 11:51:05 -04:00
f89a0f9fe3
must not try to delete computes if they have not been created and their ids not yet set
2020-08-26 11:50:20 -04:00
c8af729701
Merge branch 'master' into collected-small-changes
2020-08-26 11:49:29 -04:00
4ad68c98a0
Merge pull request #2196 from jibril-b-coulibaly/mindlin_rescale
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Implement force history in Mindlin granular pair styles
2020-08-26 11:42:06 -04:00
e2fd95d8ed
Merge pull request #2240 from jrgissing/bond/react-reset_mol_ids
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support molecule ID resets in fix bond/react
2020-08-26 10:56:21 -04:00
1c10aa6a4d
GIFs are only supported in HTML
2020-08-25 17:15:34 -04:00
c256f2331f
JPG folder is no longer needed in HTML output
2020-08-25 16:59:39 -04:00
ae5c0bd8d1
Remove targets to JPG images
2020-08-25 16:44:50 -04:00
3a638440a4
Add missing PDF folder
2020-08-25 16:12:09 -04:00
80e07c69f0
add part of developer guide as to showcase the integration of the programmer guide
2020-08-25 15:07:09 -04:00
df8fb26272
Refactor changes to documentation build
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- Added CMake variables for readability
- Moved Mathjax files to _static to avoid special copy logic
- Moved JPG/lammps-logo.png to _static to avoid special copy logic
- Removed dead CMake code
2020-08-25 13:41:31 -04:00
14b66d1f84
tweak test tolerance of reax/c tests for running on ubuntu 18.04
2020-08-25 12:15:19 -04:00
024e4c5f21
make formatting and doxygen decorations for utils functions consistent
2020-08-24 20:55:13 -04:00
3f685c346f
add doxygen integration with conventional and cmake doc build
2020-08-24 17:58:37 -04:00
dc241abb85
Merge pull request #2305 from akohlmey/next_patch_version
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Update version strings for updated patch release
2020-08-24 13:46:50 -04:00
93e4ed9770
Merge pull request #2304 from akohlmey/collected-small-changes
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Collected small changes for the next patch release
2020-08-24 11:43:42 -04:00
7e1a3bd4d5
Merge pull request #2302 from akohlmey/consistent-doc-headers
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Consistent subsection headers for commands
2020-08-24 10:52:09 -04:00
47a44732e7
add test for fix restrain
2020-08-23 15:29:58 -04:00
8f5e8300ea
fix typos in fix restrain docs
2020-08-23 15:29:49 -04:00
0842911cd8
Rename local buffers 'red_acc' in lal_tersoff*
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Rename __local red_acc in lal_tersoff
2020-08-23 22:22:28 +03:00
10080079e3
ISO compliance
2020-08-23 11:44:48 -04:00
63abb2dff9
fix broken reset_mol_ids command
2020-08-23 11:32:54 -04:00
01dd80f35e
bond/react: actually make reset_mol_ids the default
2020-08-23 11:21:43 -04:00
fb634658de
add tests for a few more force manipulation fixes
2020-08-23 07:01:38 -04:00
c503bba008
add custom pair style tests for reax/c and edip/multi
2020-08-23 06:44:33 -04:00
0fb8f6e779
add test for pair style momb
2020-08-22 23:15:20 -04:00
66b17fd2ce
dispersion only tests for buckingham
2020-08-22 23:03:20 -04:00
3def826dbe
add more tests for variants using long-range dispersion pair styles
2020-08-22 22:55:15 -04:00
f18d0507b3
fix issues with lj/long pair styles when not using long-range for dispersion
2020-08-22 22:54:38 -04:00
c8f2634b44
add tests for tabulated msm coulomb
2020-08-22 22:08:08 -04:00
e78100bdba
add (partial) tests for pair styles dpd and dpd/tstat
2020-08-22 22:00:13 -04:00
2907a10937
update version strings for new attempt for a patch release
2020-08-22 16:42:39 -04:00
1879106cc3
Merge pull request #2299 from rbberger/doc_file_size
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Avoids HTML doc pages from becoming too large
2020-08-22 15:45:06 -04:00
9152a8e98f
avoid division by zero in imaging code
2020-08-22 15:32:04 -04:00
2fd654f4fd
silence compiler warnings about unused variables
2020-08-22 15:06:00 -04:00
86153a0f77
avoid division by zero in MathExtra normalize functions
2020-08-22 15:03:27 -04:00
9136f9b9c9
Merge pull request #2303 from rbberger/binary2txt_bug
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Fixes a bug in binary2txt
2020-08-22 14:46:29 -04:00
f82b19e21f
Fix off-by-one mistake, Fixes #2300
2020-08-22 12:03:24 -04:00
b776e1ee3c
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
66438539f2
Avoids HTML doc pages from becoming too large
2020-08-21 19:47:46 -04:00
6fc2ab07ef
reset_mol_ids: unique created computes
2020-08-21 14:52:39 -04:00
2a6546d6f0
Merge pull request #2296 from akohlmey/next_patch_version
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Update version strings for next patch release
2020-08-21 14:43:56 -04:00
921b6d8135
relative threshold for contact frame update based on tangential critical force
2020-08-21 13:20:53 -05:00
cffc667259
Merge pull request #2298 from stanmoore1/mv2_var
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Fix MVAPICH2 env variable for CUDA/aware
2020-08-21 14:04:57 -04:00
e0c74a30bc
Fix MV2 env variable
2020-08-21 11:08:49 -06:00
