Commit Graph

3892 Commits

Author SHA1 Message Date
c6f637f78f Merge branch 'master' into user-cgdna 2019-10-17 18:40:50 +01:00
68dc2a7966 Added description of quasi-unique base pairing 2019-10-17 16:06:06 +01:00
68adc56e93 Merge branch 'master' into fix-compiler-warnings 2019-10-17 06:03:59 -04:00
e4c77f047f document COLVARS_LEPTON flag to CMake configuration 2019-10-16 16:19:12 -04:00
4e6f83ced2 Merge pull request #1726 from akohlmey/singularity
Add Singularity definition files suitable for compiling and debugging LAMMPS
2019-10-16 21:12:22 +02:00
38c819c281 Update compute_gyration_shape.txt
Addition of a textbook where the computed quantities are presented in more detail
2019-10-16 20:12:46 +02:00
45e8a41704 document support for r-RESPA in pair style zero 2019-10-15 17:34:37 -04:00
f3b2ec80af add false positives and correct spelling to have a clean spellcheck run on centos 7 2019-10-15 16:56:23 +02:00
faf5ded721 fix formatting and include example for setting compiler flags to enable C++11 2019-10-15 16:55:51 +02:00
e4bbfc992b Singularity definition files for compiling LAMMPS 2019-10-15 16:22:08 +02:00
29574eaa45 added "likewise" as suggested by @sjplimp 2019-10-11 17:19:47 +02:00
da56c7fc66 document freshly added warnings in header and manual 2019-10-11 16:47:35 +02:00
6e244bc8dc Merge pull request #1631 from jibril-b-coulibaly/patch-2
Bug fixes for pair style granular
2019-10-09 14:14:48 +02:00
945f903683 added an examples/UNITS dir 2019-10-08 18:02:21 -06:00
e77e286d95 Merge pull request #1707 from charlessievers/lammps_gjf
Lammps gjf small updates
2019-10-08 23:06:36 +02:00
0e10fbb133 Merge pull request #1690 from charlessievers/third_order
Added third order, added documentation, took out extraneous lines, ad…
2019-10-08 21:57:15 +02:00
9b15f4e2dc Added the change to langevin gjf documentation 2019-10-08 12:47:30 -07:00
4f57332a89 Merge pull request #1706 from TOFarmer/create_bonds_improper
Add single/improper to create_bonds
2019-10-08 21:40:31 +02:00
ac8f2e431e fix a few cut-n-paste issues 2019-10-08 14:49:20 +02:00
cf11e4be3c Added documentation for single/improper 2019-10-08 11:51:19 +01:00
8c063343a1 Merge branch 'master' into collected-small-changes 2019-10-07 18:54:33 +02:00
ed467d8867 Merge branch 'master' of github.com:alxvov/lammps into OSO
- solved conflict in doc/src/fix_nve_spin.txt
2019-10-04 08:56:49 -06:00
ed5678d646 Merge pull request #1673 from charlessievers/lammps_gjf
Lammps fix langevin updates for gjf option
2019-10-04 10:02:46 +02:00
a102d2343e Merge pull request #1692 from julient31/restart-correction
Bug correction in the SPIN package, and fix nve/spin option modification
2019-10-04 09:55:40 +02:00
afc9627506 Add files via upload 2019-10-04 09:52:45 +02:00
747bfa31f2 apply changes suggested by Andrew Santos 2019-10-03 18:31:42 +02:00
227a82e19f an update to the documentation in doc/src/fix_deposit.txt describing the orientation rx ry rz to restrict random rotation 2019-10-02 15:47:10 -04:00
bb4dc59803 fix typo 2019-09-30 16:33:07 -04:00
6cd460072b add docs for dump_modify time yes. consolidate keywords 2019-09-30 11:01:41 -04:00
fc10817950 Merge remote-tracking branch 'origin/OSO' into OSO 2019-09-30 14:55:45 +00:00
14933958f7 change units 2019-09-30 14:55:33 +00:00
23040a98f8 adds an angle constraint option for reacting molecules
also, previously, reaction templates had to contain more than two atoms
2019-09-28 23:10:34 -06:00
214850088b add NWChem wrapper to client/server mode for AIMD 2019-09-27 15:28:48 -06:00
5927f056c5 Removed redundant and out of scope gjf info from fix_langevin.txt 2019-09-25 17:22:15 -07:00
b771225f3d Edit gjf option syntax within fix_langevin.txt 2019-09-25 17:19:27 -07:00
a605fa867d Add files via upload 2019-09-25 22:11:18 +02:00
107369518e replace non-ASCII characters with their ASCII equivalents
# Conflicts:
#	doc/src/fix_wall_stochastic.txt
2019-09-25 13:36:18 -04:00
a6a78208aa Commit3 JT 092419
- modified other doc files
2019-09-24 16:01:37 -06:00
a0974bc09d Commit JT 092419
- changed the nve/spin lattice option
- from (yes/no) to (moving/frozen)
- changed the doc and all examples
2019-09-24 15:58:22 -06:00
6e56672b02 replace non-ASCII characters with their ASCII equivalents 2019-09-24 16:33:56 -04:00
c298429886 correct legacy pdf build 2019-09-24 16:33:28 -04:00
8e1fc8944a small tweak 2019-09-24 16:00:17 -04:00
d9306a5865 Commit JT 092419
- added inf norm option
2019-09-24 13:58:56 -06:00
7e6910dfe6 correct links 2019-09-24 15:42:25 -04:00
be88e65c7e reformat doc file and adjust so it converts without warnings 2019-09-24 14:19:30 -04:00
cf72a30bfd integrate fix wall/stochastic docs into manual 2019-09-24 14:18:49 -04:00
a3e255b314 Merge branch 'master' into stochasticwall 2019-09-24 12:08:38 -04:00
12ffa868b3 strip CR characters from source files 2019-09-24 12:08:16 -04:00
a31aa5debc Merge branch 'master' of github.com:alxvov/lammps into OSO 2019-09-23 14:22:26 -06:00
34f8104146 Commit3 JT 092319
- corrected a typo in doc/src/min_modify.txt
2019-09-23 13:52:48 -06:00