Commit Graph

18560 Commits

Author SHA1 Message Date
b4b071ee60 modernize fortran code in eam_database to replace features no longer allowed in fortran 2018 2019-10-21 03:12:17 -04:00
08b55c4ca5 silence compiler warning 2019-10-20 19:00:54 -04:00
c144b1af71 fix typos 2019-10-20 18:42:22 -04:00
6767fa5604 update supported plumed library to version 2.5.3 2019-10-20 16:27:32 -04:00
67512f8afc remove bogus POEMS header files from AtC lib folder 2019-10-20 16:13:03 -04:00
b705525734 resolve unused parameter warnings in USER-ATC package 2019-10-20 13:36:06 -04:00
118c2e5be3 missed one unchecked call to ftruncate() 2019-10-19 16:36:13 -04:00
fd9da6f934 make use of utils::sfgets() in a few more places 2019-10-19 13:26:55 -04:00
d8c86d9abc avoid buffer overflow 2019-10-19 11:46:00 -04:00
fb37c6eb17 reorder initialization to match definition 2019-10-19 11:45:45 -04:00
0c433d5773 update formatting to not be misleading 2019-10-19 11:45:26 -04:00
95c515420a remove dead code 2019-10-19 11:44:56 -04:00
bf537dedf5 check status of ftruncate() in ave/* fixes 2019-10-19 10:49:05 -04:00
f4fcd2a911 flag that MESSAGE package is not compatible with -DLAMMPS_BIGBIG 2019-10-19 09:50:07 -04:00
e057ae186f fix off-by-one errors in ndx_group 2019-10-18 18:22:14 -04:00
34899ad8b6 some more OpenMP related warnings squashed and code simplified 2019-10-18 17:17:04 +02:00
d1bf4d5793 reduce warnings related to OpenMP with clang 2019-10-18 16:52:16 +02:00
ed208fa4cf reduce some more compiler warnings 2019-10-18 16:16:43 +02:00
4e5520ced6 remove some dead code and reduce compiler warnings in SNAP package 2019-10-18 16:05:39 +02:00
a3f7d04199 no need to overload Pair::init_style() when doing exactly the same in USER-CGDNA styles 2019-10-18 16:05:14 +02:00
d684b70555 reduce compiler warnings in USER-AWPMD 2019-10-18 15:57:07 +02:00
5b47b0b098 formatting and reduce compiler warnings 2019-10-18 07:14:35 -04:00
f0a3628a00 reduce compiler warnings 2019-10-18 07:14:16 -04:00
dee631878d refactoring of SPIN pair class initialization to increase code reuse 2019-10-18 07:13:42 -04:00
dcb1b6500b allow regexp matches for Modify::find_fix_by_style() and consolidate usage of searching for fixes 2019-10-18 06:59:27 -04:00
bb21847f8a have sphinx configuration switch math formula renderer for epub
this still needs work, that has to be done after we switched to RST
2019-10-18 04:47:18 -04:00
24b54026e2 fix some more fgets() related warnings in pair style airebo 2019-10-18 02:42:50 -04:00
d9d22658fd Merge pull request #62 from giacomofiorin/fix-compiler-warnings
Enable COLVARS_LEPTON for make, update build doc for USER-COLVARS
2019-10-18 08:41:10 +02:00
693e34b587 Print parsed compiler flags, some cosmetic changes for added consistency 2019-10-17 22:53:13 -04:00
c578e4e7fc Enable COLVARS_LEPTON for make, update build doc for USER-COLVARS 2019-10-17 22:48:57 -04:00
27d3d44297 step version number, year, and changelog to reflect fixed bug. 2019-10-17 09:30:08 -04:00
595aa7dff3 fix segfault in atom map hash when using "clear". 2019-10-17 09:29:21 -04:00
09c15ee630 we need int64_t for both LAMMPS_BIGBIG and LAMMPS_SMALLBIG 2019-10-17 08:15:58 -04:00
108b9a0a36 USER-MOLFILE cannot be configured with CMake 2.8.12, requiring 3.10. 2019-10-17 06:33:13 -04:00
9a4f208e4e need to enable C compilation to detect BLAS/LAPACK on CMake 2.8.12 2019-10-17 06:32:35 -04:00
68adc56e93 Merge branch 'master' into fix-compiler-warnings 2019-10-17 06:03:59 -04:00
e4c77f047f document COLVARS_LEPTON flag to CMake configuration 2019-10-16 16:19:12 -04:00
4e6f83ced2 Merge pull request #1726 from akohlmey/singularity
Add Singularity definition files suitable for compiling and debugging LAMMPS
2019-10-16 21:12:22 +02:00
437c0e59f2 Merge pull request #1724 from lammps/lepton-cxx11-handling
Upgrade Lepton library, handle its C++11 requirement
2019-10-16 21:11:00 +02:00
7d5bf968f5 Merge pull request #1728 from evoyiatzis/patch-2
Update compute_gyration_shape.cpp
2019-10-16 21:10:12 +02:00
10031e91bd Update false_positives.txt
Added the name of Mattice in the list
2019-10-16 20:25:53 +02:00
38c819c281 Update compute_gyration_shape.txt
Addition of a textbook where the computed quantities are presented in more detail
2019-10-16 20:12:46 +02:00
2c9ae7ab4b Add -DCOLVARS_LEPTON, track user's choice via DISABLE_CXX11_REQUIREMENT 2019-10-16 08:35:37 -04:00
d02f806735 Merge pull request #1727 from yafshar/master
Set KIM pointer appropriately for Energy
2019-10-16 11:52:44 +02:00
b023e93ac2 Update compute_gyration_shape.cpp
Correct for squaring the eigenvalues of the gyration tensor and simplifying the expressions for the shape parameters
2019-10-16 10:19:06 +02:00
4aa47386ea make handling of (temporary) C++11 check disabling define behave consistent across CMake versions 2019-10-15 18:42:59 -04:00
6b0aba9db0 Merge pull request #1725 from charlessievers/fix_gjf_bugs
Fix gjf bugs
2019-10-16 00:36:08 +02:00
45e8a41704 document support for r-RESPA in pair style zero 2019-10-15 17:34:37 -04:00
b9727e0dfa add support for single() and r-RESPA to pair style zero 2019-10-15 17:22:27 -04:00
681a0e12e3 Set KIM pointer appropriately for Energy 2019-10-15 15:38:19 -05:00