Commit Graph

746 Commits

Author SHA1 Message Date
b8f02d759a add support for extracting respa levels and timestep values 2021-03-25 20:34:25 -04:00
e0fdd2ad89 correct lammps.extract_global() method for returned arrays which are returned as list 2021-03-25 20:34:24 -04:00
3c41c12dbc Add testcase for python/move 2021-03-24 18:58:46 -04:00
4fa5ce2dbc Remove unnecessary import 2021-03-24 18:11:31 -04:00
81e8676c7e Prepare python/move unittest 2021-03-24 17:15:07 -04:00
45191e9f7c Refactor and add fix python/invoke tests 2021-03-24 16:33:39 -04:00
b15502ddc8 Add utils::split_lines 2021-03-24 15:53:00 -04:00
1c9c46d2c1 Add tests to cover python command 2021-03-24 15:42:38 -04:00
9d3e37b102 Add more python variable tests 2021-03-24 12:43:47 -04:00
8790ecc141 Refactor existing tests 2021-03-24 11:18:21 -04:00
23c8d8ccfb Use HasSubstr since output order is dependent on buffering 2021-03-23 20:13:39 -04:00
359a369573 Ensure that global Py_UnbufferedStdioFlag is set when PYTHONUNBUFFERED=1 2021-03-23 19:57:45 -04:00
6b24006d43 Use Info::has_package to check for PYTHON support 2021-03-23 19:56:18 -04:00
180e816886 Simplify PythonPackage tests 2021-03-23 19:55:08 -04:00
41c2a82ccc Merge pull request #2666 from akohlmey/collected-small-changes
Collected small changes and fixes
2021-03-19 13:32:42 -04:00
154b8cb401 remove dead code 2021-03-19 11:42:09 -04:00
4c0efceb1e Remove invalid thermo accesses 2021-03-18 14:26:52 -04:00
42895ac6df Merge pull request #2654 from akohlmey/collected-small-changes
Collected small changes
2021-03-16 19:34:54 -04:00
2e45c84c6a Merge pull request #2655 from akohlmey/collected-refactoring
Collected small code refactoring changes
2021-03-16 18:39:30 -04:00
a6a2879807 add a few more tokenizer test cases for added use cases. 2021-03-15 12:02:58 -04:00
47b305b558 with the new llvm based intel compiler getrusage.mu_maxrss is zero 2021-03-15 00:07:57 -04:00
5d795130db more strict checking of valid input in utils::bounds() with new tests 2021-03-14 17:59:00 -04:00
4c17217ad2 add unit tests for the exceptions thrown by ValueTokenizer when data is missing 2021-03-14 17:28:03 -04:00
6158802974 add support for testing per-atom properties with fix property/atom 2021-03-14 17:18:03 -04:00
ad878bbf73 tweak epsilon 2021-03-14 05:44:39 -04:00
59977d07ef fix unit test failure for non-verbose runs 2021-03-14 05:00:22 -04:00
5e18518f7a group tester covers now about 40% of group.cpp 2021-03-14 00:49:35 -05:00
9be96fb96a add unit test for groups 2021-03-13 22:53:03 -05:00
a1b26fdfc4 small unit test epsion tweaks for impropers 2021-03-13 20:48:34 -05:00
5f3649ed95 correctly process strings with DOS-style CR-LF in lammps_commands_string() 2021-03-13 15:48:22 -05:00
8325740663 add test for partition command 2021-03-11 06:46:53 -05:00
6b3f0ddd3b Merge pull request #2647 from agiliopadua/fep
Updated examples in USER-FEP
2021-03-08 23:00:33 -05:00
37afa0e6d5 Merge pull request #2638 from akohlmey/parse-molecule-refactor
Further refactor parsing of molecule files
2021-03-08 20:04:07 -05:00
f17ac30875 Merge pull request #2590 from markc242/relres-update
New pair style lj/relres
2021-03-08 19:53:03 -05:00
728b4801fd Use other example for thermo_style multi test 2021-03-08 18:15:43 -05:00
7b4034d07a reformat. compute/check some molecule properties 2021-03-02 23:05:27 -05:00
c44dbc567d tweak test for creating atoms and bond from a molecule file 2021-03-02 22:41:09 -05:00
6ab8de58bc add a few more tests 2021-03-02 22:26:40 -05:00
16631a0c18 add tests for one file with two molecules and two files with one each 2021-03-02 15:54:06 -05:00
e3942a0d48 update test to use stdio consistently 2021-03-02 12:53:15 -05:00
e4ce1de66b add "death tests" for no molecule file and molecule file w/o atoms 2021-03-02 12:16:12 -05:00
861ad834c6 fix typo 2021-03-02 11:22:43 -05:00
01a32b67b0 add minimal unit test program for molecule files 2021-03-02 11:07:03 -05:00
ca8b268ad5 new convencience function for checking valid IDs (includes unit tests) 2021-03-02 11:02:09 -05:00
5407d2968a update unit test reference 2021-02-28 23:33:05 -05:00
e75f1f2f82 Merge branch 'master' into relres-update 2021-02-28 23:20:44 -05:00
30d15b9b22 test for extract parameters in unit tests 2021-02-28 11:59:17 -05:00
1521c7a370 Merge pull request #2625 from yafshar/kim_citation
Updating the kim citation report to lammps conventions
2021-02-26 20:38:28 -05:00
2ab9c34e52 Merge pull request #2631 from rbberger/python_additions
Add LAMMPS output readers to Python package
2021-02-26 20:27:52 -05:00
e88c124da6 add extra cases for query unit test 2021-02-26 12:47:43 -06:00