Commit Graph

415 Commits

Author SHA1 Message Date
ba1c848f43 Merge branch 'develop' into numerial_propagation 2023-11-16 12:01:11 -05:00
1f509d900e make output more consistent with other LAMMPS code 2023-11-16 11:57:33 -05:00
b326572916 flag input errors 2023-11-15 09:49:58 -05:00
9ef1b2d64d apply clang-format 2023-11-11 06:20:55 -05:00
3d14e2e0e2 whitespace 2023-11-11 06:05:07 -05:00
4ef27552c4 fix spring_force()'s position 2023-11-11 03:10:00 -05:00
ba32afc06e fix spring_energy 2023-11-11 01:45:36 -05:00
98a0f43c9b add spring_force function 2023-11-11 01:04:13 -05:00
6393519419 q_step function 2023-11-10 16:07:00 -05:00
f413d395a5 add support for method=PIMD; add q_step function 2023-11-10 00:20:51 -05:00
e6d3148533 add method=pimd support for Langevin thermostat 2023-11-09 23:34:01 -05:00
80f72e7a1d use times inverse_np instead 2023-10-21 00:28:33 -04:00
3d480a01a5 add the missing dividing by np in compute t_prim 2023-10-20 23:41:06 -04:00
5a455c5e3a remove redundant calls to fmt::format() from calls to error->one/all() and utils::logmesg() 2023-09-26 23:56:51 -04:00
76c0632363 remove dead code, class members that should be local, initialize others 2023-08-25 09:15:31 -04:00
cc9dee5ecd use references instead of copies when looping over list of selected fixes 2023-08-03 11:00:05 -04:00
3568cced4b update comment 2023-07-17 09:52:44 -04:00
fd0a72eab5 modernize and consolidate style across all three temper command variants 2023-07-15 12:37:12 -04:00
e6873bb7c8 modernize code 2023-07-14 20:08:34 -04:00
78d3d4948f fix off-by-one bug in argument parsing 2023-07-14 20:08:21 -04:00
6791651b62 add else branch to make coverity scan happy 2023-06-20 09:41:55 -04:00
dfd384eeff some more formatting and programming style improvements 2023-06-14 03:40:38 -04:00
494341ba48 error out when using barostat without pressure couple or vice versa 2023-06-14 03:40:12 -04:00
6f69e5ae02 initialized all pointers to null in initializer list 2023-06-14 03:18:37 -04:00
8984b89feb use consistent comments, apply clang-format 2023-06-14 03:18:17 -04:00
f83867787c update error message 2023-06-06 18:17:39 -04:00
5ff6fd9aad rename kBT to kt 2023-06-06 18:14:28 -04:00
a415d732fc rename Langevin init 2023-06-06 18:11:01 -04:00
f3bf20be8b The first three p_flags for iso should be 1. 2023-06-01 08:26:02 -04:00
6bc27db58c do not delete c_pe and c_press in destructor 2023-06-01 06:17:11 -04:00
5d66dc6659 apply clang-format 2023-05-17 17:50:15 -04:00
79f3eb6a4d remove debug code 2023-05-17 17:35:22 -04:00
8736f97792 remove dead code 2023-05-17 17:35:14 -04:00
39f61b6af3 Merge branch 'develop' into pimd_langevin 2023-05-17 17:30:49 -04:00
de45437cc9 apply clang-format 2023-05-04 03:32:59 -04:00
b61e06a40f must initialize fp to avoid crash in destructor 2023-05-04 03:32:39 -04:00
42758d0780 delete dynamically allocated arrays in destructor 2023-03-31 03:28:09 -04:00
25c449df8e enable restart in fix pimd/langevin 2023-03-31 03:03:17 -04:00
18e4ed2e32 do not transform velocity to normal mode in setup 2023-03-31 00:59:35 -04:00
0d8623c3f2 simplified logic from clang-tidy 2023-03-26 21:33:37 -04:00
1463e2c52b Merge branch 'develop' of https://github.com/lammps/lammps into pimd_langevin 2023-03-22 13:44:53 -04:00
3d47c5c6f0 add x/y/z barostating options 2023-03-21 08:38:14 -04:00
be8c0b9835 enable fixcom feature of fix pimd/langevin 2023-03-20 14:08:42 -04:00
d8f41a9032 support sp in fix pimd/nvt 2023-03-18 10:25:05 -04:00
7beec96dd3 support sp in fix pimd/langevin 2023-03-18 10:23:09 -04:00
76c19410c7 correct fmass input of fix pimd/langevin 2023-03-17 17:44:48 -04:00
008147d1f3 correct mass preconditioning of fix pimd/langevin 2023-03-17 17:41:29 -04:00
aa84548002 set mapflag=0 if there is only 1 bead 2023-03-15 16:45:18 -04:00
0aca0435ef delete mapflag input script interface 2023-03-15 16:43:44 -04:00
3f965a1c33 format the specification of external pressure 2023-03-15 16:25:56 -04:00