Commit Graph

17 Commits

Author SHA1 Message Date
2132b1d904 update developer reference text 2022-10-24 11:08:26 -04:00
cccf3f6f78 change email for contacting LAMMPS developers, add to homepage checker 2022-10-20 20:36:03 -04:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
7fcd449864 apply clang-format to all headers with some exceptions 2021-05-14 19:16:07 -04:00
df7fe4431f make LAMMPS homepage URL and C++ indicator comments consistent 2021-04-22 21:26:07 -04:00
942ed3afeb update copyright headers to match LAMMPS' conventions 2020-09-16 17:35:58 -04:00
bd542efa52 include math_eigen.h, remove it from .gitignore 2020-09-16 14:12:14 -04:00
10991ee638 separate the MathEigen implementation into its own header file 2020-09-16 14:06:58 -04:00
56b1300fd3 reverted the default behavior of "jacobi3()". By default it now sorts the eigenvalues again. 2020-09-08 21:58:54 -07:00
6ade5dd740 changed the default sorting options in "jacobi3()" to be more similar to the original "jacobi()" function from "math_extra.h". This should not have any effect on LAMMPS behavior 2020-09-08 17:05:08 -07:00
a57a1404f3 bug fix fix unit tests, improve doc readability, and to prevent accidentally allocating memory on the heap. (Note: All of these changes are related to "jacobi3()". That function instantiates Jacobi without allocating memory on the heap, and this created some headaches. The original code at https://github/jewettaij/jacobi_pd does not have this feature, and the unit tests there do not test for these kinds of errors. Hopefully this commit fixes everything.) 2020-09-06 20:05:47 -07:00
b29522273a changed the "trim_and_count_words()" function declaration in "utils.h" to make sphinx happy. Fixed some new spelling mistakes. 2020-09-06 09:40:28 -07:00
4ad6d99ca0 updated documentation files: "pg_developer.rst", "math_eigen.h", and "false_positives.txt" 2020-09-05 20:08:45 -07:00
7cb774e6bc some corrections before rewriting the doxygen comments to comply with LAMMPS doxygen style. 2020-09-05 16:37:15 -07:00
4b66414bdf fixed a type error in math_eigen.h 2020-09-05 10:38:14 -07:00
57f82abae3 updated all code in LAMMPS to use the open-source "math_eigen.h" instead of "math_extra.h". Code in "lib" now uses its own abbreviated local version of the "math_eigen.h" file (which is named "jacobi_pd.h"), since it is not clear how code from "lib/" can access the code in "src/" 2020-09-05 01:39:27 -07:00
7f6fc8a003 updated math_eigen.h and moved it into the main "src" directory 2020-09-04 04:10:47 -07:00