Commit Graph

43161 Commits

Author SHA1 Message Date
bc791da69e Merge remote-tracking branch 'github/develop' into collected-small-fixes 2025-03-25 17:53:23 -04:00
7878ec170c Merge pull request #4501 from lammps/errors-more-cleanup
[Community Project] More Error and Warning Messages Cleanup
2025-03-25 17:52:08 -04:00
0b43649e74 Merge pull request #4513 from akohlmey/howto-bulk-to-slab
Add a Howto showing how to convert a bulk system to a slab
2025-03-25 16:54:38 -04:00
227b7840e7 add disclaimer and improve some formulations 2025-03-25 15:42:11 -04:00
2d0c1af656 Merge remote-tracking branch 'github/develop' into howto-bulk-to-slab 2025-03-25 15:40:55 -04:00
fecd93783b spelling 2025-03-25 15:40:40 -04:00
678e90f669 make spellchecker happy 2025-03-25 14:55:30 -04:00
2ea5cf1206 Merge remote-tracking branch 'github/develop' into collected-small-fixes 2025-03-25 14:16:04 -04:00
9e241df062 Merge pull request #4182 from akohlmey/group-bitmap-accessor
Refactor code to use group bitmap accessor
2025-03-25 14:12:27 -04:00
5dbeacb1e8 Merge pull request #4508 from jewettaij/master
Fixed the Moltemplate HowTo docs
2025-03-25 13:02:31 -04:00
bdf1b541b1 Merge branch 'mac' of https://github.com/fxcoudert/lammps into collected-small-fixes 2025-03-25 11:38:54 -04:00
66d5fbd4bd Merge pull request #4516 from Eddy-Barraud/dpd_charged
wrong qi*qj in the cuda code
2025-03-25 11:28:21 -04:00
183486d813 implement suggestions from @ndtrung81 2025-03-25 11:27:19 -04:00
3872fa16d4 small update to internal command documentation 2025-03-25 04:37:15 -04:00
7fba02f865 fix logic bug when writing coeffs to data file 2025-03-25 03:02:17 -04:00
5a62d0a129 correct data in data file and pair_coeff changes are no longer needed
also re-create reference log files
2025-03-25 03:01:38 -04:00
3ed03c4044 add post_constructor() method to computes for symmetry with fixes 2025-03-24 22:59:36 -04:00
15026cfa56 cosmetic 2025-03-24 22:59:05 -04:00
d830412228 added boolean
the read_data is not reading slater boolean of pair_coeff
2025-03-24 16:04:40 +01:00
bbd057891a wrong qi*qj cuda code
correction of cutsq[mtype].z instead of extra[j].x !
2025-03-24 15:35:34 +01:00
e79fcfb4ef implement improved version of go-to-top button with javascript requiring only one click 2025-03-24 00:14:50 -04:00
a64863caa6 fix sphinx directive error in embedded docs 2025-03-23 16:37:20 -04:00
824b1b0b66 relax epsilon to pass tests on macos-arm64 2025-03-23 16:36:16 -04:00
3d5430bfe4 Merge branch 'develop' into errors-more-cleanup 2025-03-23 16:01:00 -04:00
adaa313990 Merge pull request #4502 from akohlmey/collected-small-fixes
Collected small changes and fixes
2025-03-23 15:59:38 -04:00
88cecbd11d alternate implementation of jump to top by @rbberger 2025-03-22 18:54:49 -04:00
c65c8819e3 cosmetic changes and re-wrap paragraphs 2025-03-22 16:06:17 -04:00
f4b92a23ae small clarification cherry-picked from PR #4502 2025-03-22 15:47:52 -04:00
6f24e1edd5 remove leftover pieces of obsolete warning 2025-03-22 15:42:51 -04:00
12cc12b4f4 Typos and alternate wording suggestions 2025-03-22 12:57:28 -06:00
cb5e45ff1f small tweaks 2025-03-22 11:24:53 -04:00
8a0900f0ab revert broken change to print angstrom character 2025-03-22 11:20:37 -04:00
9d0c25fbab improve wording 2025-03-22 11:15:26 -04:00
c289ad9471 forgot to include upward arrow image 2025-03-22 06:08:48 -04:00
725b34a70a add snapshot images to show the initial and final geometry and box 2025-03-22 06:08:16 -04:00
410d3e84b0 add a Howto demonstrating how to convert a bulk molecular system to a slab 2025-03-22 04:41:34 -04:00
1b58a4695b add explanations for "before/after simulation box is defined" errors 2025-03-21 20:30:47 -04:00
649fd86e11 add errorurl(11) with explanation to "Energy/Stess was not tallied by pair style" 2025-03-21 19:57:57 -04:00
3834169c92 first attempt to implement a "jump to top" anchor in the sidebar 2025-03-21 19:30:28 -04:00
3ab91e4e1a fix up uses of errorurl(21) 2025-03-20 23:12:21 -04:00
c037ec07a2 make utils::errorurl() point to generic page with error code 0 2025-03-20 22:45:41 -04:00
e9bc334a14 add some more missing errorurl() calls and error pointers 2025-03-20 22:45:01 -04:00
3b61bcf890 more error reporting updates 2025-03-20 12:31:08 -04:00
e4c96459e5 flag some more compatible time and out-of-bounds errors with errorurl()s 2025-03-20 06:16:59 -04:00
ca575e395e fix spelling and duplicate references issues 2025-03-19 20:39:06 -04:00
643afe6eff fix segfault issue for optional arguments 2025-03-19 20:28:42 -04:00
04bb57f8e2 update a bunch more error messages 2025-03-19 17:17:47 -04:00
37248a011e deleted trailing whitespace in the Howto_moltemplate.rst file (for PR #4508) 2025-03-19 15:30:06 -04:00
63b8e86a4b tried to minimize the differences between my version and the existing version 2025-03-19 13:58:46 -04:00
6700a3bed1 Fixed the Moltemplate HowTo docs. (I also added a very simple polymer example.) This needed to be done because the file names and @atom types in the old version of this HowTo are no longer accurate. OPLSAA has changed. Now this HowTo is compatible with the latest version of OPLSAA. More importantly, after this update, the HowTo documentation should never need to be updated again because OPLSAA force field files are named according to the OPLSAA version/date. For example, the "oplsaa.lt" file has been renamed to "oplsaa2024.lt". Future OPLSAA updates will go in other files with different names. So the @atom types in this HowTo example should never need to be updated in the future, regardless what happens with OPLSAA. 2025-03-19 13:36:09 -04:00