Commit Graph

19721 Commits

Author SHA1 Message Date
c47245c629 update/correct lammps executable manpage 2020-02-14 10:33:08 +01:00
f70e39c366 update fix ave/correlate/long docs to include info about limitations in output options vs. ave/correlate 2020-02-14 09:30:06 +01:00
076c28538c Merge branch 'read_dump_item_time' of https://github.com/mkanski/lammps into collected-small-fixes 2020-02-13 13:13:24 -05:00
9e35b85335 Merge remote-tracking branch 'github/master' into collected-small-fixes 2020-02-13 13:13:12 -05:00
7c62bce7d9 Enable reading dump file with ITEM:TIME 2020-02-13 18:13:22 +01:00
5d467bcc74 Merge pull request #1876 from Vsevak/tip4p_gpu_sharedtypes
TIP4P GPU kernel: shared memory optimization
2020-02-12 11:11:17 -05:00
10a76affd4 Merge pull request #1877 from ellio167/openkim-models-docs
Add openkim-models install instructions
2020-02-12 11:08:25 -05:00
cf67c16fcb Add openkim-models install instructions 2020-02-11 22:33:56 -06:00
d024b3d340 Add shared memory optimization 2020-02-12 01:35:44 +03:00
ed9c8b4ea0 reset Modify::n_timeflag in post_run() so we won't skip computes defined between runs 2020-02-11 00:30:09 -05:00
23b7adc9b2 we must defer to Modify::addstep_compute_all() if Modify::addstep_compute() if n_timeflag has not been set 2020-02-11 00:06:41 -05:00
ec3e687b0c fix bug in set type/ratio when operating on subsets 2020-02-10 16:22:23 -05:00
f0935feabe Merge pull request #1868 from akohlmey/next_patch_version
Step version strings for next patch release
patch_4Feb2020
2020-02-03 11:50:12 -05:00
966bc626fc Merge pull request #1858 from akohlmey/fft-consistency
Improved consistency and thread support in FFTs
2020-02-03 11:14:16 -05:00
f95428ee5e Merge pull request #1867 from akohlmey/doc-convert-to-mathjax
Convert more documentation to use embedded math expressions
2020-02-03 11:11:33 -05:00
b71e41dc8a minor fixes 2020-02-03 10:48:04 -05:00
1827ce1d32 update dynamical_matrix docs 2020-02-03 09:01:31 -05:00
73364404a1 Step version strings for next patch release 2020-02-03 07:18:31 -05:00
ecf30b47a0 Convert and revise a few more files (minimize, neb, tricilinic) 2020-02-02 22:35:39 -05:00
fde2a59b0e update documentation for contributing files and building the manual to using rst files 2020-02-02 19:05:35 -05:00
5b557ca4c8 remove references to .txt files for building the documentation 2020-02-02 18:50:49 -05:00
8ef3d77724 Convert documentation of improper styles from images to mathjax 2020-02-02 18:22:40 -05:00
949f88eb65 Convert documentation of dihedral styles from images to mathjax 2020-02-02 17:22:54 -05:00
bbf229e8cc Merge pull request #1866 from YunxingZuo/master
add SNAP and quadratic SNAP potentials for six elemental systems
2020-02-02 06:55:09 -05:00
0a10f5567a correct potential file format to be compatible with latest lammps 2020-01-31 21:04:03 -08:00
01a6608fb6 add SNAP and quadratic SNAP potentials for six elemental systems 2020-01-31 19:30:02 -08:00
2b6a022309 Merge branch 'master' into fft-consistency 2020-01-31 20:51:58 -05:00
dd91d519e1 Merge pull request #1703 from jboschen/nwchem
add NWChem wrapper to client/server mode for AIMD
2020-01-31 20:50:51 -05:00
5983c2a87d Merge pull request #1864 from akohlmey/doc-remove-redundant-links
More documentation ReStructuredText cleanup
2020-01-31 17:32:51 -05:00
472fe8216f address spelling errors 2020-01-31 16:54:27 -05:00
b66717d8cb add one more missing link 2020-01-31 16:40:41 -05:00
a9a2a9fef9 provide updated information on how to report bugs on github or via e-mail 2020-01-31 16:39:34 -05:00
f386598c54 restore missing links 2020-01-31 16:39:09 -05:00
1a4e6228a2 add false positive 2020-01-31 15:59:26 -05:00
21a80e9b50 fix typo 2020-01-31 15:57:52 -05:00
8fd2ab78f1 Merge branch 'master' into nwchem
# Conflicts:
#	doc/src/Howto_client_server.rst
#	doc/src/server_md.txt
2020-01-31 15:56:25 -05:00
97addd2bee Merge branch 'master' into doc-remove-redundant-links
# Conflicts:
#	doc/src/min_modify.rst
#	doc/src/min_style.rst
#	doc/src/minimize.rst
2020-01-31 15:39:25 -05:00
947827fe1f Merge pull request #1052 from jguenole/adaptglok
Optimized implementation of FIRE
2020-01-31 15:24:00 -05:00
0f37e641eb restore one global definition of previously removed links, that are still in use 2020-01-31 14:09:12 -05:00
3169ef772b delete superfluous horizontal line plus preceding empty lines at the end of doc files 2020-01-31 14:06:14 -05:00
cdf2f66c0a delete empty lines at the end of files 2020-01-31 14:03:52 -05:00
ce10fd01a8 remove redundant/obsolete link definitions 2020-01-31 14:00:53 -05:00
b524db88a3 Merge remote-tracking branch 'github/master' into adaptglok
# Conflicts:
#	doc/src/min_modify.rst
2020-01-31 12:24:59 -05:00
56ff70de70 Merge pull request #1860 from akohlmey/collected-small-changes
Collected small changes for next patch release
2020-01-31 12:21:17 -05:00
39188da85b Merge pull request #1857 from ohenrich/user-cgdna
USER-CGDNA: Increased tolerance for fatal error in FENE bond
2020-01-31 12:20:57 -05:00
710929da1d Merge pull request #1861 from akohlmey/doc-link-escape-removal
Documentation link formatting cleanup and fixup
2020-01-31 11:00:27 -05:00
6424883daf apply revisions suggested by @sjplimp 2020-01-31 10:52:31 -05:00
82aab36898 reset array size since we don't use the last element anymore 2020-01-31 09:59:35 -05:00
2069c7a5fd correct incorrect bugfix 2020-01-31 09:58:04 -05:00
31c4833707 correct out-of-bounds array access in RanMars::select_subset() 2020-01-31 09:51:23 -05:00