Commit Graph

56 Commits

Author SHA1 Message Date
c4729b39b4 replace more uses of XXXINT_FORMAT with fmtlib 2022-03-30 13:53:25 -04:00
56cd66a6c3 Merge branch 'master' into parse-logical-keyword
# Conflicts:
#	src/H5MD/dump_h5md.cpp
2021-09-29 23:05:59 -04:00
6f87b1236a cosmetic 2021-09-25 10:42:52 -04:00
53e773e438 calling fwrite() with a null pointer causes undefined behavior. avoid it. 2021-09-25 10:18:55 -04:00
41a3eccd1c apply utils::logical() to more commands 2021-09-21 07:48:50 -04:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
ffb86eb2ab fix bug 2021-03-15 11:27:27 -04:00
b13e5fa234 simplify using std::string and utils::strdup(); get rid of strtok() 2021-03-15 09:36:49 -04:00
adf74b3a22 use https://lammps.sandia.gov based URLs consistently 2020-10-21 16:45:30 -04:00
f1ef7d85a8 T2345: Replace instances of NULL with nullptr
The following changes have been applied to src and lib folders:
regex replace: ([^"_])NULL ⇒ \1nullptr (8968 chgs in src, 1153 in lib)
Manually find/change: (void \*) nullptr ⇒ nullptr (1 case)
regex find: ".*?nullptr.*?"
  Manually ~14 cases back to "NULL" in src, ~2 in lib
  regex finds a few false positive where nullptr appears between two
  strings in a function call
2020-09-12 09:34:38 -06:00
f9697bd9f5 Add optional TIME to binary dump atom format 2020-08-13 11:48:29 -04:00
6d80435b51 Refactoring dump_atom.cpp 2020-08-13 11:35:05 -04:00
6d825dcb6b Add UNITS information to dump atom binary format 2020-08-13 10:49:03 -04:00
560c29a0e1 Extends header of new binary format of dump atom 2020-08-11 17:37:46 -04:00
b08751d65a Add triclinic tests for dump atom 2020-08-11 16:17:36 -04:00
2ad9e06bac Sync DumpAtom and binary2txt to generate the same
Modifies the binary dump atom format to include columns information.
binary2txt showcases how to detect the new format by checking for
negative ntimestep values. It increases the binary file size
16 bytes per timestep.
2020-08-11 14:59:01 -04:00
01214de6bd add support for adding an ITEM: TIME output to some dump files 2019-09-30 11:03:22 -04:00
e413aaf217 add support for optionally including unit information in standard dump files 2019-09-12 14:37:42 -04:00
15d2e1b260 consistent formatting 2019-09-10 09:36:17 -04:00
cd846e1bbb add ITEM: UNITS line to native text format dumps 2019-09-10 09:18:38 -04:00
7967cb1133 put implementation header first to avoid issues with mpi.h and lmptype.h with OpenMPI 2019-07-03 06:16:16 -04:00
31cbccda85 continue cleaning up include file lists 2019-06-29 09:37:44 -04:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
be6c086cb4 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15428 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 16:29:35 +00:00
38226b8086 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15426 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-03 16:09:38 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
bad19033d0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11250 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-17 18:43:09 +00:00
a1ef01fc1a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11243 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-14 16:17:20 +00:00
378ab5cce1 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11036 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-11-21 20:47:55 +00:00
c87f384140 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9751 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-04-04 14:22:04 +00:00
66c5617afb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8395 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-25 22:03:31 +00:00
ef9e700545 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8226 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-06 22:47:51 +00:00
8af0a6a14c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8188 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-05-25 22:14:42 +00:00
144f2f2fd6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8159 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-05-23 15:51:56 +00:00
4f48544d41 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7379 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-12-16 21:15:49 +00:00
19e8c92a90 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7003 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-09-23 18:06:55 +00:00
f7ce52785b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5937 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-04-13 21:56:33 +00:00
3b43d998c2 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5924 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-04-11 19:42:51 +00:00
d4b0e14541 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5922 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-04-11 19:37:10 +00:00
d5b494397e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5547 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-01-14 15:53:06 +00:00
82ec94916d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5520 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-01-11 00:41:00 +00:00
86ed0949f7 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5506 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-01-07 21:59:18 +00:00
140cdf9485 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5504 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-01-07 21:42:19 +00:00
ded8b22c19 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4795 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2010-09-15 22:16:20 +00:00
4900c3d0c0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3598 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2009-12-21 21:21:22 +00:00
799775274d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3150 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2009-09-04 19:39:53 +00:00
c2831bbc36 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3000 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2009-07-22 16:34:52 +00:00
5a0f2e17b3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2648 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2009-03-16 22:34:07 +00:00
216f4bb3f7 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2455 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2009-01-13 15:40:03 +00:00