Commit Graph

14608 Commits

Author SHA1 Message Date
58ed92d905 one more file that doesn't require to include accelerator_kokkos.h 2017-12-01 16:45:22 -05:00
14aa036f36 add missing header files to USER-INTEL package 2017-12-01 15:53:02 -05:00
42e03da70c Remove redundant #include in input.cpp 2017-12-01 13:16:35 -07:00
5d2e097b27 Need dynamic cast for multiple inheritance 2017-12-01 12:53:40 -07:00
da51a8a0bb Add missing header files to GPU package 2017-12-01 12:13:14 -07:00
80dffb27e2 Add missing header files 2017-12-01 11:33:42 -07:00
5b33f153f4 Add newline to memory_kokkos.h 2017-12-01 10:33:47 -07:00
31eb12920c Use multiple inheritance to remove accelerator_kokkos.h out of region.h and kspace.h 2017-12-01 10:18:22 -07:00
31f2ca1e4c Use multiple inheritance to remove accelerator_kokkos.h out of pair.h 2017-12-01 09:51:40 -07:00
15a3364c2c Make memory_kokkos its own class 2017-12-01 09:13:31 -07:00
c3aa705d04 Improve performance of pair_reaxc, this change is safe because the non-bonded i-loop doesn't include ghost atoms; this optimization is already included in the USER-OMP version 2017-11-30 09:22:32 -07:00
8c2d38c7e9 Remove non-existent function in reaxc_forces_omp 2017-11-30 09:13:03 -07:00
e3b961b622 Improve performance of PairReaxCKokkos 2017-11-30 09:10:39 -07:00
319508bd29 fix scoping ambiguity issue that confuses nvcc 2017-11-30 10:56:58 -05:00
6f7bd78ea2 Fixes issue #701
PyLammps now supports thermo_style entries such as c_msd[4]
2017-11-29 01:06:44 -05:00
5647522906 various small cosmetic adjustments to increase conformance with LAMMPS programming conventions 2017-11-28 12:34:23 -05:00
e4b14213b4 delete old log files. new log files are approved by @athomps 2017-11-28 11:35:49 -05:00
fa6fc947f2 fix issues in FixNeighHistory and FixNeighHistoryOMP reported in https://sourceforge.net/p/lammps/mailman/message/36138319/
This supersedes and closes PR #734
2017-11-28 11:28:15 -05:00
e1189381e0 correct documentation for create_atoms rotate
This closes #736
2017-11-28 11:19:19 -05:00
39d24ab7eb ExTeP potential file header update 2017-11-27 21:25:23 +01:00
5770a20e2c added ExTeP to USER-MISC 2017-11-27 21:16:51 +01:00
83ec9815fe Merge pull request #733 from pastewka/17_dump_nc3
BUG: Proper handling of bigint data in NetCDF dump style. Affects LAMMPS version compiled with LAMMPS_BIGBIG.
2017-11-27 11:07:58 -07:00
90ee52296b Merge remote-tracking branch 'andeplane/fix_ave_chunk_bug' into collected-bugfixes
this closes PR #732
2017-11-27 11:45:09 -05:00
f02eb225c6 Merge branch '17_dump_nc3' of github.com:pastewka/lammps into 17_dump_nc3 2017-11-26 22:39:03 +01:00
a111cf640a BUG: Proper handling of bigint data. Corrects behavior when compiled with LAMMPS_BIGBIG. 2017-11-26 22:35:56 +01:00
e755a8339d BUG: openfile is called multiple times, second call stopped code with 'at keyword requires use of append yes' 2017-11-26 22:31:47 +01:00
f7f6a15ac0 MAINT: Removed superfluous code. 2017-11-26 22:31:47 +01:00
36b7aa73aa MAINT: Use proper data type for bigint when defining NetCDF file. 2017-11-26 22:31:47 +01:00
9a5723123f Set peratom_freq in fix ave/chunk 2017-11-21 23:43:52 -08:00
7d07f062b6 Remove const from variable 2017-11-20 10:21:19 -07:00
f3ed148828 Fix for big endian machines 2017-11-20 10:18:53 -07:00
5ba80662c3 Undid the removal of rad in pair_yukawa. 2017-11-17 15:07:59 -05:00
53c1558271 Updated docs for pair_yukawa 2017-11-17 14:21:54 -05:00
8e5d4fa891 Added a KOKKOS-enabled Yukawa pair style. 2017-11-17 14:12:16 -05:00
e55c90cc44 Moved rerun bug fix to individual affected styles 2017-11-14 14:01:07 -05:00
ec067bde36 fix cut-n-paste error in create_bond docs 2017-11-13 17:59:16 -05:00
751465aad3 Merge branch 'master' into cluster-fragment-aggregate-fixes 2017-11-13 14:32:26 -05:00
adbc75cae6 add alternate log files with the latest version of LAMMPS 2017-11-13 11:52:01 -05:00
dde94c28a7 new example scripts for fix gcmc 2017-11-13 09:07:25 -07:00
f2dc764d1d Merge pull request #723 from lammps/replicate_bbox
Add bounding box to Replicate command
2017-11-13 09:01:38 -07:00
c4c59b909e Merge pull request #716 from akohlmey/collected-small-changes
Collected small changes and bugfixes for next patch
2017-11-13 09:00:26 -07:00
e2e21f0661 Merge pull request #714 from Pakketeretet2/user-manifold-plane-wiggle-fix
User manifold plane wiggle fix
2017-11-13 08:59:40 -07:00
6abf68f614 Merge pull request #712 from akohlmey/linalg-for-latte
Update lib/linalg for use with lib/latte
2017-11-13 08:59:18 -07:00
a97553a92e Merge pull request #709 from abbatux/patch-1
Update pair_smd_tlsph.cpp
2017-11-13 08:58:29 -07:00
dbd4acc4d6 Merge pull request #708 from abbatux/patch-2
Update smd_material_models.cpp
2017-11-13 08:58:07 -07:00
a085ee0c55 Always build occasional lists on first step 2017-11-13 04:53:16 -05:00
c16b7a3273 Multiple run fix for cluster/aggregate computes 2017-11-12 15:57:53 -05:00
858065029d Reverse communication compute fragment/aggregate 2017-11-12 15:57:02 -05:00
40e776ebc6 Remove OpenMP from KOKKOS_DEVICES in Kokkos CUDA Makefiles since normally this doesn't improve performance 2017-11-10 09:55:11 -07:00
f043212511 USER-DPD: fix a segfault when using constant temperature (DPD vs. DPDE) 2017-11-07 13:57:29 -06:00