Commit Graph

14608 Commits

Author SHA1 Message Date
4784506ba9 Remove unused function in rand_pool_wrap_kokkos 2017-08-23 15:02:26 -06:00
270abff2a2 Fix compile error for CUDA in pair_exp6_rx_kokkos 2017-08-23 14:59:19 -06:00
b6c93f96cf Merge pull request #629 from stanmoore1/kokkos_update
Update Kokkos library to v2.04.00
2017-08-23 14:39:42 -06:00
7b7a5076d0 Merge pull request #624 from akohlmey/compute-fragment
Add computes fragment/atom and aggregate/atom
2017-08-23 14:14:33 -06:00
1536eb5de5 Merge pull request #630 from akohlmey/moltemplate-update
Update for moltemplate to version 2017-8-22
2017-08-23 14:13:07 -06:00
f7a0a6eb70 Merge pull request #622 from akohlmey/collected-small-fixes
Collected small fixes
2017-08-23 14:12:45 -06:00
d80a6cbd31 Merge pull request #621 from lammps/user-meso
new USER-MESO package
2017-08-23 14:12:18 -06:00
c4b37039ab Merge pull request #619 from jrgissing/molecule_maxspecial
molecule maxspecial value corrected when specials autogenerated
2017-08-23 14:11:47 -06:00
b52efa2850 add compatibility to NetCDF 4.3.3 as bundled with RHEL 7.x 2017-08-23 15:28:27 -04:00
e88ff8d6f9 correct embedded help for GPU lib Install.py 2017-08-23 15:20:30 -04:00
97edf90a73 update fix qeq docs for the new, more flexible parameter file format 2017-08-23 11:22:09 -04:00
12150ffa73 add moltemplate version 2017-8-22 2017-08-23 07:54:56 -04:00
57aafba7c3 remove old moltemplate version 2017-08-23 07:54:05 -04:00
cdfb1aa043 make links unique, fix doc format warnings and add entries to administrative files 2017-08-23 00:39:52 -04:00
b80752a40c restore changes to read_data docs, that would have been lost due to merging an outdated version 2017-08-23 00:01:19 -04:00
79d5ca669d fix issues indicated by compiler warnings 2017-08-22 23:46:32 -04:00
26c15140be add USER-MESO files to .gitignore 2017-08-22 23:46:09 -04:00
5c985946d5 Merge branch 'master' into USER-DPD_kokkos 2017-08-22 13:50:19 -06:00
090c792d90 Update Kokkos library to v2.04.00 2017-08-22 13:42:02 -06:00
c5ccbbeea7 cmake: fix 'make test' 2017-08-22 07:13:04 -06:00
e2a1b666be Merge remote-tracking branch 'junghans/cmake_flags_summary' into cmake_improvements 2017-08-21 20:54:24 -04:00
ad0ecfa507 Merge remote-tracking branch 'junghans/lammps_suffix' into cmake_improvements 2017-08-21 20:53:53 -04:00
cf3f15b0a5 cmake: make h5md includes local 2017-08-21 15:04:03 -06:00
5fcc19777c cmake: fix molfile compile 2017-08-21 14:24:00 -06:00
1f4c550f9f cmake: make awpmd includes local 2017-08-21 13:09:52 -06:00
24c00b1f7a fix typo 2017-08-21 13:12:48 -04:00
5a0c3aea8a add a compute aggregate/atom, that combines the rules for compute cluster/atom and fragment/atom 2017-08-21 13:12:43 -04:00
c8aa06b959 cmake: build libs separate 2017-08-21 11:12:36 -06:00
bdccdbf2c2 cmake: make linker flags more clear 2017-08-21 10:20:56 -06:00
6d86697b3f cmake: move option in user options block 2017-08-21 10:18:20 -06:00
d1a0c040c9 add initializers for nmatch/nwant variables in molecule file parser 2017-08-20 23:28:13 -04:00
892a3f8609 cmake: make _ in LAMMPS_MACHINE implicit 2017-08-20 09:39:51 -06:00
de5883b7bb cmake: LAMMPS_SUFFIX -> LAMMPS_MACHINE 2017-08-20 09:27:12 -06:00
b1615d1839 cmake: print flag summary 2017-08-20 09:17:49 -06:00
aef2416ece Simplify CMake script 2017-08-20 10:49:30 -04:00
00a78cfa1a cmake: add LAMMPS_SUFFIX 2017-08-20 08:30:09 -06:00
f5b8f722ee remove non-portable non-ascii blanks from fix wall/ees docs 2017-08-20 10:09:21 -04:00
39e51df2c0 add missing entry in pdf manual 2017-08-20 10:02:11 -04:00
c895df73d6 skip over disabled bonds 2017-08-20 09:49:01 -04:00
4dc1195cd8 add docs for compute fragment/atom 2017-08-20 09:41:49 -04:00
35fd82b602 trim unneeded includes 2017-08-20 09:19:04 -04:00
c5ce3ffe60 use list of bonds per atom instead of bondlist, as that will work with shake as well 2017-08-20 09:18:04 -04:00
c9d41dbb47 Ignore installed package files when using cmake 2017-08-19 06:33:27 -04:00
1a80d4bc13 Remove style files in src dir while running cmake 2017-08-19 05:55:51 -04:00
aa1ce09b12 more cleanup, checks and generalization of QEQ parameter file parsing 2017-08-18 20:03:47 -04:00
f945d4567d new USER-MESO package 2017-08-18 17:33:42 -06:00
44ccdb86df add checks when reading QEQ parameter file to avoid segfaults and memory corruption on incorrect files 2017-08-18 19:24:39 -04:00
2e6a928aa3 ignore file recently added to USER-INTEL 2017-08-18 19:23:33 -04:00
6f66e6c454 add new compute fragment/atom 2017-08-18 19:07:32 -04:00
822bffdfae Merge pull request #1 from amilumas/temper_npt
Temper_NPT and example
2017-08-18 15:29:59 -04:00