Commit Graph

14608 Commits

Author SHA1 Message Date
5dbe2df854 revert change that accidentally undoes part of PRs #583 and #588 2017-07-20 17:07:31 -04:00
427ca88dd4 cmake: error for POEMS + BODY package 2017-07-20 15:02:41 -06:00
3f83396837 Merge pull request #588 from akohlmey/colvars-quickfix
avoid makefile failure, if LAMMPS has not been configured yet
2017-07-20 14:45:25 -06:00
59db5f6a17 update of Fortran-DFTB interface to be compatible with fix msst 2017-07-20 14:40:35 -06:00
1749d643c7 GPU: bring back CUDPP_OPT 2017-07-20 14:30:52 -06:00
f037f89f5f fix GPU + BUILD_SHARED_LIBS
X-Thanks: Robert Maynard <robert.maynard@kitware.com>
2017-07-20 14:12:23 -06:00
1b704bab18 Merge branch 'colvars-safer-makefiles' of https://github.com/giacomofiorin/lammps into colvars-quickfix 2017-07-20 15:59:23 -04:00
c98f6140e7 Change order of targets in Makefiles for Colvars 2017-07-20 15:49:31 -04:00
5031f5b807 Comment out use by Colvars of Makefile.lammps from other packages 2017-07-20 15:48:10 -04:00
9d0d90c038 README clarification from giacomo 2017-07-20 15:25:27 -04:00
66154e8a8b avoid makefile failure, if LAMMPS has not been configured yet 2017-07-20 15:05:58 -04:00
d2f76ae394 Merge pull request #586 from ellio167/kim-install
Refactor lib/kim/Install.py; works with python 3 and 2.7
2017-07-20 14:40:57 -04:00
3cd597e948 Merge pull request #585 from akohlmey/make-py-manual-cleanup
Make.py removal and manual cleanup
2017-07-20 12:05:04 -06:00
eca61226c2 Merge pull request #583 from giacomofiorin/colvars-update-2017-07-19
Update Colvars to version 2017-07-15 and support automated builds for it
2017-07-20 12:04:49 -06:00
fac3e3daa2 Merge pull request #581 from libAtoms/idces2quip
Modified USER-QUIP interface to pass lammps atom IDs
2017-07-20 12:04:32 -06:00
72e5f537c8 Merge pull request #576 from akohlmey/sanitizer-changes
Collected changes for issues detected by gcc -fsanitize
2017-07-20 12:03:40 -06:00
84065dde21 Refactor lib/kim/Install.py; works with phtyon 3 2.7 2017-07-20 12:02:50 -05:00
bdd2f3a6b2 remove references to Make.py and USER-CUDA 2017-07-20 12:25:42 -04:00
a351977c59 update manual links that got broken when removing and renumbering a section 2017-07-20 12:25:42 -04:00
8499e72cdc updates to USER-REAXC code in USER-OMP from Chris Knight. addresses issues with multiple threads in use 2017-07-20 12:11:46 -04:00
ef9fb944c7 Detect number of processors for make 2017-07-20 10:53:08 -04:00
187a80be77 Add forgotten decode() in Install.py 2017-07-19 22:21:49 -04:00
488609a5fd make FFT a selective option 2017-07-19 18:54:15 -06:00
01bcb79bdc cmake: clean up and updated comments 2017-07-19 18:34:07 -06:00
babba1870e added FFTW2 support 2017-07-19 15:33:02 -06:00
355aad9691 restore python3 support. this now can run with python 2.7.13 and 3.5.3. 2017-07-19 17:19:44 -04:00
a99e3ef4f0 cmake: fix typo and pkg info 2017-07-19 15:15:59 -06:00
c95db97b83 fix PYTHON install 2017-07-19 15:15:24 -06:00
ec42a60587 Merge pull request #584 from ellio167/kim-install
Update lib/kim/Install.py for phthon 2.7 conversion
2017-07-19 16:21:04 -04:00
ee6cac826e Update Colvars to version 2017-07-15 and support automated builds for it 2017-07-19 14:24:07 -04:00
f181a0bfab Update lib/kim/Install.py for phthon 2.7 conversion 2017-07-19 12:54:33 -05:00
52a1c54d50 support QUIP wrapper API version query, relax hybrid restriction to allow hybrid/overlay, update docs 2017-07-19 13:17:35 -04:00
fcf9607a66 Update USER_QUIP docs to clarify use of "special_bonds" 2017-07-19 17:47:21 +01:00
2961ba7ebb added MKL support 2017-07-19 10:35:48 -06:00
e2ad4fa745 GPU: cubin not needed 2017-07-18 19:29:40 -06:00
acbc60319f GPU: clean up part 2 2017-07-18 18:43:51 -06:00
e6f5f77edf GPU: clean up 2017-07-18 18:38:36 -06:00
864fd9cd87 remove cubin_headers hack 2017-07-18 18:20:23 -06:00
4d65c327f5 added minimal README 2017-07-18 16:06:29 -06:00
81f342aafa fix variable name bug and synchronize with other ported Install.py files 2017-07-18 18:06:18 -04:00
c3d9786616 GPU compiles 2017-07-18 16:01:35 -06:00
7ccb0d37cd port USER-SMD folder. make voronoi consistent with it 2017-07-18 17:37:48 -04:00
03cd4c5255 ported lib/voronoi/Install.py to python 3.x and tested with 2.7 2017-07-18 17:16:10 -04:00
148364949e fix memory corruption issue in fix reax/c/species 2017-07-18 16:11:49 -04:00
17aff29fe2 fix off-by-one bug when copying strings 2017-07-18 15:48:31 -04:00
f96b9e0dcf add various checks and improvements to identify incompatible uses and warn or exit with error message 2017-07-18 15:48:18 -04:00
a9eaeb4d95 working on GPU build 2017-07-18 13:47:03 -06:00
5cbaf7ca1d correct commands table format issue 2017-07-18 14:47:54 -04:00
02572a4099 add workaround that allows pair style quip to work with -DLAMMPS_BIGBIG, assuming tags are still only 32-bit signed integer 2017-07-18 14:41:38 -04:00
49b4cf9a77 remove references to Make.py and USER-CUDA 2017-07-18 13:24:32 -04:00