Commit Graph

39918 Commits

Author SHA1 Message Date
9e917412c9 fix typo and rewrap lines 2024-07-11 12:39:42 -04:00
e51e0c1fb7 re-order entries 2024-07-11 11:37:42 -04:00
b9e263b1d1 re-add empty row between special and regular pair styles 2024-07-10 16:17:33 -04:00
8f6cf085e8 syncing table in build_packages/extra 2024-07-09 15:06:18 -06:00
d0e5640a75 add cvflag check, update mem usage 2024-07-08 05:05:36 -06:00
7673a904d1 update variable for consistency w/ non-kokkos 2024-07-08 05:05:06 -06:00
4bc97dc812 fix topo labels 2024-07-08 05:01:23 -06:00
aaf25602e3 add Q_MASK to datamask_read 2024-07-07 17:11:18 -04:00
b1a4f08dd2 Update in.charmmfsw 2024-07-07 16:56:00 -04:00
c77d2d952d Update pair_lj_charmmfsw_coul_long_kokkos.cpp 2024-07-07 16:55:39 -04:00
06e8f8eab2 cleanup 2024-07-07 15:57:37 -04:00
9c37e0f0df add charmmfsw example for kokkos gpu testing 2024-07-07 15:32:12 -04:00
2cb3cb3323 merging charmmfsw properly into spica (1st try) 2024-07-07 11:04:11 -04:00
bac8885739 minor changes 2024-07-07 06:19:42 -04:00
2459b7e975 oops 2024-07-07 05:58:27 -04:00
68231e9ba4 minor formatting changes 2024-07-07 05:49:03 -04:00
62ac8d0ab3 fixes 2024-07-07 02:59:43 -04:00
1a30fe5349 reset_atoms: one more grammar tweak 2024-07-06 18:03:43 -04:00
08cf19955d minor corrections to 'reset_atoms' docs 2024-07-06 17:57:18 -04:00
b1db2ddb3f store 'nchunk for msd' on first pass
because nchunk can be modified elsewhere
2024-07-06 15:57:18 -04:00
b7942ead3f chunk docs typo 2024-07-06 15:49:46 -04:00
54901eb8a4 remove pointless check 2024-07-06 09:55:41 -04:00
f34b6dacaf improve fix indent documentation 2024-07-06 09:55:22 -04:00
c3f76dcc81 cleanup 2024-07-06 01:12:23 -04:00
fdf9ffee73 use auto for type 2024-07-06 00:52:27 -04:00
9c8f7854ad avoid out-of-bounds string character access during completion 2024-07-06 00:50:15 -04:00
fecf38e116 move d_type = atomKK->k_type.view<DeviceType>() to compute() 2024-07-06 00:20:45 -04:00
87060b2d3e display selected C++ standard as part of the CMake summary output 2024-07-05 21:37:04 -04:00
f05c87cd43 use proper const qualifier 2024-07-05 21:31:52 -04:00
96f2e32591 fix typo 2024-07-05 20:15:30 -04:00
61e391b449 correct check for invalid header keywords 2024-07-05 19:28:04 -04:00
b89bc47626 more thorough checks for molecule file header keywords 2024-07-05 19:10:48 -04:00
a3bacfca65 more unit tests for tokenizer functions constains() and matches() 2024-07-05 18:55:55 -04:00
6fd962e132 spelling 2024-07-05 16:44:08 -04:00
880aa40d1b add missing header 2024-07-05 16:23:02 -04:00
2fc664d5da added kokkos views 2024-07-05 16:21:43 -04:00
dacc55b889 Prevent overflow in neighbor output 2024-07-05 16:20:28 -04:00
f0a11dbefd also promote ndatum in MyPoolChunk class 2024-07-05 16:16:04 -04:00
caa1b4a891 promote ndatum to bigint to avoid overflows 2024-07-05 16:12:08 -04:00
8fcde04097 add a "matches()" method to the Tokenizer and ValueTokenizer classes using utils::strmatch() 2024-07-05 15:45:49 -04:00
810698dc07 Skip neighbor folding at first call
There may be issues due to the fact that the NL is initialized
with the LAMMPS data file, that does not have to be the same
as the starting config in i-PI
2024-07-05 09:07:30 +02:00
eeaecb3ed3 macOS app bundle requires -D BUILD_TOOLS=yes 2024-07-04 15:13:06 -04:00
0d54f99fc0 Fixed a nasty bug when running the ipi interface with many MPI workers
Looks like the migrate() call should happen before trajectory folding
2024-07-04 17:34:18 +02:00
c0dfccdd64 add a few more flags to clang-tidy 2024-07-04 11:18:08 -04:00
da2bd44b73 modernize and reformat with clang-tidy and clang-format 2024-07-04 11:17:54 -04:00
cefe76919c make more use of auto and thus avoid having to specify the same type twice 2024-07-04 11:12:40 -04:00
10e3595b57 separately catch exceptions thrown by new 2024-07-03 22:20:06 -04:00
a4d69878fa update list of available sanitizers for Fedora 40 and GCC 14 2024-07-03 22:02:35 -04:00
f94b078936 use pkg-config instead of pkgconf consistently, since the latter comes with compatibility to the former 2024-07-03 21:21:35 -04:00
0fb7493658 spelling fixes 2024-07-03 19:17:11 -04:00