Commit Graph

82 Commits

Author SHA1 Message Date
f864a52720 Merge branch 'master' into random_deposit 2019-10-04 14:55:29 +02:00
f74c5fc956 add RanPark pRNG warmup also to fix evaporate and create_atoms 2019-08-22 09:38:55 -04:00
3eadfa15ef Merge pull request #1512 from mkanski/rotate_molecules
Extend support of "rotate" keyword to all styles of "create_atoms"
2019-07-30 10:53:37 -04:00
7967cb1133 put implementation header first to avoid issues with mpi.h and lmptype.h with OpenMPI 2019-07-03 06:16:16 -04:00
557a1274e4 even more include file cleanup 2019-06-28 07:09:57 -04:00
3611cfdaf8 All styles support setting molecules' orientation 2019-06-14 19:58:31 +02:00
9912c44413 rendevous comm option for special bonds and fix rigid/small 2019-03-26 11:01:33 -04:00
de29763d1a new attempt at the create_atoms optimization for small regions in large boxes
this passes the test input with the rotated lattice
2019-02-25 17:11:54 -05:00
1b4ed9cb8d revert region optimization to create_atoms 2019-02-08 16:24:48 +01:00
2e60e461a0 must convert regions bounding box to lattice coordinates before checking to reduce lattice creation range 2019-01-31 18:12:37 -05:00
8338969af5 bugfix for create_atoms region optimization 2019-01-31 11:46:03 +01:00
e572235ecf optimize create_atoms performance for large boxes and small regions. warn if taking a long time 2019-01-08 14:33:07 -05:00
4ec05a3389 remove some more trailing whitespace 2018-12-01 08:14:02 -05:00
dcde84eb53 bug fix for create_atoms single remap and triclinic 2018-10-18 11:22:51 -06:00
71e1867dd2 move enum{LAYOUT_UNIFORM,LAYOUT_NONUNIFORM,LAYOUT_TILED}; to Comm class 2018-05-10 00:50:20 -04:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
59dbb49cf9 remove trailing whitespace 2018-03-16 12:37:27 -04:00
58e1969de2 rename misleading "CPU time" into "Time spent" 2017-10-06 14:34:10 -04:00
214c0cfb2b add atom_modify map yes, also timers to create_atoms and replicate 2017-10-05 16:44:24 -06:00
3a054d1a82 Fix more typos in src files 2017-03-07 00:55:01 -05:00
d9891abdf4 new library functions 2016-10-27 09:34:04 -06:00
0bffc1711e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15435 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-08-04 16:39:15 +00:00
984a1afa72 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14449 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-15 15:53:23 +00:00
e72cef0c3a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14421 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-11 22:00:29 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
48019ede12 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13071 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-02-06 16:32:49 +00:00
86daf16069 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12996 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-01-28 15:55:56 +00:00
fdd3c860d0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12675 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-30 17:43:04 +00:00
664cf51d7b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12673 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-10-30 17:35:21 +00:00
1541a02bc6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12276 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-08-07 14:23:22 +00:00
cf005551ea git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12200 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-07-28 18:46:50 +00:00
de0c8d1f14 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11946 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-05-08 14:51:32 +00:00
af5d91115f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11875 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-05-02 14:28:56 +00:00
1f0f8c82c7 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11352 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-28 21:50:39 +00:00
0ce16af78b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11328 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-25 22:46:08 +00:00
41c5be7a8e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11300 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-22 18:33:55 +00:00
127eb167c1 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11293 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-22 17:44:32 +00:00
bad19033d0 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11250 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-17 18:43:09 +00:00
a1ef01fc1a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11243 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-14 16:17:20 +00:00
16652ef654 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11196 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-08 20:47:11 +00:00
21833c99de git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11192 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-01-08 20:38:38 +00:00
6792813662 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10887 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-10-30 14:13:30 +00:00
d2530875e3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10514 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-08-02 14:41:59 +00:00
aa33af4032 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10160 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-06-28 19:00:58 +00:00
db8eda0253 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9913 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-05-24 18:55:24 +00:00
37fc180bf7 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9708 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-03-22 22:32:52 +00:00
912cfaca75 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8497 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-07-25 15:15:41 +00:00
f38a94ae8a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8457 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-07-02 14:14:01 +00:00
0d3734ead4 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8399 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-25 23:41:39 +00:00
66c5617afb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8395 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-25 22:03:31 +00:00