Commit Graph

51 Commits

Author SHA1 Message Date
eb80fd3031 Add method to copy Kokkos neighbor list to CPU list 2020-02-26 14:26:46 -07:00
69854eab42 Expose Neighbor lists via library interface 2019-09-12 13:46:05 -04:00
42c31227d9 continuing to clean up include file lists 2019-07-01 15:59:16 -04:00
96744c4933 more include file cleanup 2019-06-30 15:53:17 -04:00
994fd2af0e move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h 2018-05-09 23:46:09 -04:00
59dbb49cf9 remove trailing whitespace 2018-03-16 12:37:27 -04:00
279339ebd0 Remove the now unused AIRct_ssa[] array from the NeighList class. 2017-11-03 13:42:36 -05:00
0966e14e73 more changes to rRESPA neighbor lists 2017-10-17 17:33:01 -06:00
01051e4cb1 refactoring of neighbor history 2017-10-10 16:53:51 -06:00
20ae05055d fix memory leak via NeighListKokkos::clean_copy()
There were several clean_copy() calls in pair
styles *outside device code*.
They seem to have been left over from an abandoned
effort to copy the Kokkos neighbor list as
a member of the pair style, instead of copying
out the individual views needed.
These leftover clean_copy() calls were setting
pointers to NULL that had not been freed,
leading to large memory leaks.
I've removed the clean_copy() function entirely,
and replaced it with the copymode flag system used
in many other Kokkos objects.
The copymode flag is only set to one in
functors that hold copies of the neighbor list.
2017-03-28 11:38:26 -06:00
4b3197202b USER-DPD: Rework SSA to use a new neighbor list structure, ready for Kokkos
NOTE: pair evaluation order changes, causing numerical differences!
Atom pair processing order is fully planned out in npair_half_bin_newton_ssa
Makes the SSA neighbor list structure very different. Do not use by others!
Each local is in ilist, numneigh, and firstneigh four times instead of once.

Changes LAMMPS core code that had been previously changed for USER-DPD/SSA:
Removes ssaAIR[] from class Atom as it is now unused.
Removes ndxAIR_ssa[] from class NeighList as it is now unused.
Increases length of ilist[], numneigh[], and firstneigh[] if SSA flag set.
2017-02-22 15:08:21 -05:00
151b3f552b USER-DPD: Save pointer to the NPair used to create the NeighList
Gives a user of NeighList access to data stored in a custom NPair
2017-02-22 15:08:21 -05:00
3dbbea342a remove a debug print line 2017-02-21 15:57:03 -07:00
1cd4c48ccc new SNAP potential for W 2017-02-21 15:49:21 -07:00
9161bd98bf fixed bug with pair hybrid/overaly and manybody potentials finding the right skip neighbor method 2016-12-21 09:50:29 -07:00
8318c67816 Kokkos neighbor refactor 2016-12-07 13:00:27 -07:00
8ed3f4226e USER-DPD: move custom binning stuff to a NBinSSA child class.
Removes most SSA specific fields from class NeighList.
2016-09-09 12:19:06 -04:00
c9c2ae6c61 new neighbor list changes 2016-09-07 13:42:58 -06:00
6e2a74eaf9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15340 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-18 16:59:02 +00:00
ea39843564 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15329 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-15 23:14:13 +00:00
d326e8a767 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15313 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-14 19:44:08 +00:00
28faf10980 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15275 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-09 20:41:21 +00:00
50ac419d3f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15159 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-08 23:15:55 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
b35f4e52db git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13631 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-17 15:04:19 +00:00
e72afc5488 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12955 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-01-19 23:38:26 +00:00
0f6eb0877e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@12310 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-08-14 16:30:03 +00:00
0343052dc9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11766 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2014-04-10 20:21:07 +00:00
34e5eed83c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11001 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-11-08 16:50:09 +00:00
7e26c6085f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10969 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-11-05 15:53:00 +00:00
60d49a7aad git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10230 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-07-08 20:10:50 +00:00
5b5798769f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10215 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-07-03 15:50:00 +00:00
ef9e700545 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8226 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-06-06 22:47:51 +00:00
3450c008aa git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7850 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-02-28 17:29:18 +00:00
52568d2738 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7849 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-02-28 17:19:20 +00:00
8c372f6c41 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7266 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-12-01 17:21:19 +00:00
8a24e16c91 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7197 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-10-25 16:21:15 +00:00
c6bbdcfbf2 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7184 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-10-24 20:28:02 +00:00
8aec110fb8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5864 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-28 14:53:34 +00:00
1ea4501637 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5847 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-26 20:36:43 +00:00
1202c2a2be git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5845 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-26 19:26:23 +00:00
1f2a7add78 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5836 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-26 00:50:29 +00:00
159d131e37 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5797 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-18 15:09:03 +00:00
09c391fb2d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5793 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-16 20:03:49 +00:00
8dad49156d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5792 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-03-16 15:21:59 +00:00
d71b088457 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4355 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2010-06-28 22:06:53 +00:00
6eacb0b5f9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1358 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2008-01-09 16:17:21 +00:00
bf6007fd78 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1070 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2007-10-22 17:45:06 +00:00
14458f1506 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1014 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2007-10-11 23:09:11 +00:00
aef3f32236 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@951 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2007-10-04 17:57:04 +00:00