Commit Graph

21450 Commits

Author SHA1 Message Date
61d0592e6a Fix compile error with pair_sw_kokkos 2020-06-11 11:13:36 -06:00
558b9201ac Fix typo 2020-06-11 12:37:44 -04:00
e9a52a2b1b More doc updates 2020-06-11 12:30:02 -04:00
b299601a41 Update fix_wall_gran docs 2020-06-11 12:22:55 -04:00
ff35f421ac Don't store atom tag, just if there is a contact 2020-06-11 11:35:27 -04:00
7ace10238d change interface to Input::write_echo() to accept const std::string 2020-06-11 10:23:44 -04:00
9945f73743 fix spelling in a few more files 2020-06-11 01:05:58 -04:00
81d937ee97 Performance optimization of Tokenizer
Reduces string allocations and removes std::vector from Tokenizer
Most processing now happens on-demand.
2020-06-11 00:22:04 -04:00
b287651ed6 fix a bug with checking too early for ineligibilty for biasing 2020-06-10 16:56:52 -06:00
e4d1068c70 flag a couple fixes and their derived clases as incompatible with resetting atom IDs 2020-06-10 16:47:55 -06:00
d02363b8fb adding a reset_ids sort option 2020-06-10 16:33:05 -06:00
64a4e5e21a make kokkos configuration keywords in traditional build case insensitive 2020-06-10 15:53:09 -04:00
6f78dd688a Minor doc changes & rename store_contacts to contacts 2020-06-10 15:52:47 -04:00
71d3827cce Merge pull request #2140 from stanmoore1/kk_depend
Add missing Kokkos dependency
2020-06-10 15:50:10 -04:00
c3d5e46f9a one more permission fix 2020-06-10 13:48:25 -04:00
8a71d760f2 fixup permission on doc file 2020-06-10 13:41:57 -04:00
4c3a13873e {fmt}: don't use [[gnu::fallthrough]] on intel compilers 2020-06-10 13:37:30 -04:00
404516060d Add missing Kokkos dependency 2020-06-10 10:49:41 -06:00
1a1cc99144 use correct expression for source folder. small output tweak. 2020-06-10 12:41:20 -04:00
6891fa2610 update a few URLs to use https: instead of http: 2020-06-10 12:34:09 -04:00
f36a84bdd3 add CMake support for fetching external potential files 2020-06-10 12:29:48 -04:00
20a9794b92 fix permissions 2020-06-10 11:26:08 -04:00
72ce9dfacb add feature to transparently fetch external potential files when a package is installed 2020-06-10 11:25:59 -04:00
d436550d63 remove too big C_10_10.mesocnt potential 2020-06-10 09:56:47 -04:00
0b7f58e674 Merge pull request #2137 from jtclemm/ptemp
Adding new ptemp keyword to fix/nh
2020-06-09 19:01:30 -04:00
2f5a8d0937 remove trailing whitespace 2020-06-09 17:28:26 -04:00
3ea39f5a23 Update fix_nh.rst
Removed mbox commands
2020-06-09 14:58:25 -06:00
833ebeb0a0 remove \mbox{} macros which are incompatible with make pdf 2020-06-09 16:42:26 -04:00
c3831f8971 Merge pull request #2126 from vmohles/add-ECO-DF
Add fix orient/eco to USER-MISC
2020-06-09 16:41:07 -04:00
32984cb8c4 add reference to LAMMPS slack 2020-06-09 16:06:47 -04:00
1221906ed9 fix whitespace issues 2020-06-09 15:14:49 -04:00
ecc142229d update outputs again 2020-06-09 15:09:45 -04:00
fa07f64b81 add missing linefeed 2020-06-09 15:06:13 -04:00
999ed36e6a update log files for new version 2020-06-09 15:04:53 -04:00
bb5b931d78 Merge remote-tracking branch 'github/master' into add-ECO-DF 2020-06-09 14:55:40 -04:00
89fb194f51 update to fix orient/eco from the authors 2020-06-09 14:55:31 -04:00
719936580a Merge pull request #2135 from akohlmey/cmake-legacy-gpu-conflict
Handle conflict between conventional build and CMake build in lib/gpu
2020-06-09 14:26:42 -04:00
4c6c4ac405 Update fix_nh.rst
Adding linebreaks for legibility
2020-06-09 12:20:21 -06:00
e47d48eed8 Change output message and use list(APPEND) 2020-06-09 12:10:35 -04:00
954f728225 Always set CMAKE_LIBRARY_PATH if environment variable LIBRARY_PATH is set
This resolves issues such as CUDA_CUDA_LIBRARY NOTFOUND if LIBRARY_PATH is
set to the CUDA stubs folder, but ignored by CMake.
2020-06-09 11:30:54 -04:00
2010cf97a9 add documentation for the cubin header check and explain the reason 2020-06-09 07:41:18 -04:00
78f030a07a test for *cubin.h files in lib/gpu that conflict with cmake compilation 2020-06-09 07:32:49 -04:00
e641671da9 Merge pull request #2132 from akohlmey/collected-bugfixes-and-updates
Collected bugfixes and updates
2020-06-08 19:55:34 -04:00
3b1219f0f5 Merge pull request #2133 from ThFriedrich/master
Added missing and correct a few existing "Syntax" and "Examples" labels in docs
2020-06-08 19:20:32 -04:00
016629252d a few more tweaks needed for centos8 and fedora32 2020-06-08 19:18:01 -04:00
ac85071bc4 need one more step with ubuntu to allow enabling PPA repos 2020-06-08 16:08:03 -04:00
2668e3deb6 add manual installation of plumed library 2020-06-08 14:39:34 -04:00
8b154cfbf6 must not set *any* communicators in plumed lib when using MPI_STUBS 2020-06-08 10:38:20 -04:00
7512cd3518 Merge branch 'master' of github.com:ThFriedrich/lammps into collected-bugfixes-and-updates 2020-06-08 09:48:21 -04:00
ee5e479343 make sure that when unpacking the Nbr struct you convert the index back to the closest image relative to the center atom 2020-06-08 09:33:21 -04:00