Commit Graph

17514 Commits

Author SHA1 Message Date
2e1da2958d resolve toctree and paper anchor issues 2019-04-05 11:04:11 -04:00
2757e4e6e6 two more false positives 2019-04-05 10:53:41 -04:00
85a0461a48 reword and reformat text in Howto_bioFF.txt a little bit. add warnings about msi2lmp's age and lack of maintenance 2019-04-05 10:53:23 -04:00
20cbe1edff Merge branch 'patch-1' of https://github.com/evoyiatzis/lammps into collected-small-changes 2019-04-05 10:36:53 -04:00
cb272159ba Merge branch 'master' of github.com:lammps/lammps into gran_mods 2019-04-05 07:53:51 -06:00
73b2e1f47c Merge conflict in doc page (newline issue) 2019-04-05 07:53:32 -06:00
5d3801cb12 Include info for COMPASS in the Howto section 2019-04-05 15:50:58 +02:00
383e206cc2 the GCC folks did it again. :-( 2019-04-05 08:00:04 -04:00
8b2a8ad08b fix stupid typo 2019-04-05 06:32:59 -04:00
42e8a7613e stop with error or print a warning when the system or atom ids get to large for reax/c pair styles 2019-04-05 06:29:38 -04:00
4f026b9b38 remove trailing whitespace 2019-04-05 06:14:10 -04:00
76dfcc1dfd Merge branch 'mc-bigbig-fix' of https://github.com/rtoijala/lammps into collected-small-changes 2019-04-05 06:07:54 -04:00
9543335613 Merge branch 'master' into collected-small-changes 2019-04-05 06:05:22 -04:00
f4159ff592 implement different -DLAMMPS_BIGBIG workaround without breaking format 2019-04-05 05:53:19 -04:00
e359e80118 fix bug reported in issue #1410 2019-04-04 22:39:58 -04:00
dbbf198edb more accurate matching of styles using utils::strmatch() 2019-04-04 17:10:27 -04:00
df94e80bb1 silence compiler warnings 2019-04-04 16:52:08 -04:00
4003387fb1 dead code removal 2019-04-04 16:51:59 -04:00
ab5c3b0386 protect against possible buffer overflow 2019-04-04 16:51:37 -04:00
78bab6ee39 make format macros in USER-REAXC compatible with -DLAMMPS_BIGBIG 2019-04-04 16:36:57 -04:00
c52a330a79 update USER-PLUMED support for version 2.5.1 and fix bug in Install.py script 2019-04-04 14:19:53 -04:00
265ad4512d add sanity check on plumed pre-installed path location 2019-04-04 13:18:27 -04:00
605524ab66 Merge pull request #1406 from akohlmey/fix-some-64-bit-integer-issues
Fix some 64 bit integer issues
2019-04-04 12:47:34 -04:00
968ac3d8d7 Merge pull request #1367 from mkanski/reax_better_errors
Removing calls to MPI_Abort from reax/c + a fix for a memory leak
2019-04-04 12:47:02 -04:00
81dd96f970 print more meaningful error message when trying to access individual data from a local array produced by a compute */local 2019-04-04 12:42:54 -04:00
50427ce05d flag intended fallthrough cases for GNU compilers 2019-04-04 09:38:53 -04:00
a9c376f20d use tagint instead of int when communicating atom ids 2019-04-04 09:38:28 -04:00
88d160f86e avoid segfault in Special::angle_trim() if only angles or only dihedrals are defined 2019-04-04 09:13:18 -04:00
8c03f51020 fix 32-bit/64-bit overflow issue in expression 2019-04-04 09:01:39 -04:00
2aa7a150b4 USER-SMD: Use TAGINT_FORMAT where appropriate 2019-04-04 15:53:00 +03:00
6679469220 USER-MANIFOLD: Use TAGINT_FORMAT where appropriate 2019-04-04 15:52:57 +03:00
da77dde04d MC/fix_bond_break: Use TAGINT_FORMAT where appropriate 2019-04-04 14:51:40 +03:00
6ff1fee6d6 more simplifications 2019-04-04 09:54:39 +02:00
619c2322e5 Merge remote-tracking branch 'upstream/master' into fix-elstop 2019-04-04 10:03:36 +03:00
0d78c7b43d fix elstop: Rename to fix electron/stopping 2019-04-04 09:57:15 +03:00
8820467a8b fix wrong column size assignment bug when using optional arguments in some local computes 2019-04-03 15:15:40 -04:00
d4a495151e Simplify access to error in reax/c/omp 2019-04-03 19:40:40 +02:00
e45e92b1cb Commit JT 040319
- improved examples
- start rework gneb init. (Rodrigues' formula)
2019-04-03 11:24:37 -06:00
501558743b Merge with current master 2019-04-03 19:17:15 +02:00
d7a5bf4e16 Repair last commit 2019-04-03 18:52:14 +02:00
1a105253c1 Check the MPI rank differently 2019-04-03 18:24:38 +02:00
f2f49e60bf Make some errors more elaborate + change some error->all to error->one 2019-04-03 18:12:12 +02:00
f73ccc3025 Merge pull request #1402 from akohlmey/collected-small-changes
Collected changes for improving CI testing, CMake, and coding convention compliance
2019-04-03 10:51:40 -04:00
1696432e82 resolve conflict between src/STUBS/mpi.h and lib/message/cslib/src/STUBS_MPI/mpi.h 2019-04-03 01:00:53 -04:00
7372e8fde1 must add STUBS_MPI to cslib includes when compiling without MPI 2019-04-03 00:41:03 -04:00
f17aff6331 add some missing entries to src/USER-MISC/README 2019-04-03 00:24:36 -04:00
537704fdaa eliminate the use of the "using" keyword in headers of the KOKKOS package 2019-04-03 00:13:52 -04:00
52a13f31b3 remove "using namespace" from header 2019-04-03 00:04:12 -04:00
f02b364e6e remove "using namespace" from header and include required header 2019-04-03 00:03:34 -04:00
40f1662c93 reduce compiler warnings 2019-04-02 23:44:00 -04:00