Commit Graph

17514 Commits

Author SHA1 Message Date
3d2c731709 avoid class initialization order warnings 2018-09-10 22:32:56 -04:00
02b653c0ce correct end of itemized list to be compatible with txt2rst conversion 2018-09-10 22:22:42 -04:00
a33f45f176 Merge pull request #1112 from akohlmey/rename-cdeam-omp
Rename files for pair style eam/cd/omp in USER-OMP
2018-09-10 15:16:10 -04:00
a903e64947 Merge pull request #1114 from junghans/cmake_eigen3
cmake: fix Eigen3 detection
2018-09-10 10:45:20 -04:00
46b87518b8 cmake: use NO_MODULE for Eigen3 2018-09-10 00:35:55 -04:00
45682f8695 Merge pull request #1115 from junghans/cmake_globfix
cmake: fix globbing of emacs files
2018-09-09 22:15:44 -04:00
2faa34b2be Merge pull request #1105 from rbberger/truncate-file-path
Avoid buffer overflow during errors with long filenames
2018-09-09 01:30:14 -04:00
075d366051 Merge pull request #1116 from akohlmey/correct-doc-build
Correct multiple issues in manual build
2018-09-09 01:28:29 -04:00
3b073de357 make it less likely to have people get confused by Eigen3_DIR 2018-09-09 01:21:37 -04:00
6f379f54d6 Merge pull request #1117 from lammps/doc-tweak
small doc page changes, format and content on doc page tarballs
2018-09-07 23:48:46 -04:00
e325c78628 Merge pull request #1101 from Pakketeretet2/bugfix-pair-morse-smooth-linear
Bugfix pair morse smooth linear
2018-09-07 23:38:16 -04:00
b488f1072e recent package links 2018-09-07 14:22:38 -06:00
0384ef8967 more tweaks to client/server doc pages 2018-09-07 14:00:39 -06:00
25907c856e small doc page changes, format and content on doc page tarballs 2018-09-07 09:56:03 -06:00
861a7acdf0 cmake: fix globbing in some more places 2018-09-07 06:40:06 -06:00
f7cdf2a7b8 Merge pull request #26 from lammps/master
rebase
2018-09-06 21:37:52 -06:00
aea148a86a Merge pull request #1100 from rbberger/info-command-refactoring
Avoid unnecessary sorting in print_columns
2018-09-06 22:55:56 -04:00
dd64c063cf various fixes for the manual to address breakage from merging MESSAGE and USER-SCAFACOS packages 2018-09-06 22:28:20 -04:00
44fcdc4024 update reference examples with versions that do not vary by MPI rank count 2018-09-06 21:20:47 -04:00
947f574503 Merge branch 'master' into compute_mop
# Conflicts:
#	cmake/CMakeLists.txt
2018-09-06 21:13:42 -04:00
5c4434b283 Merge pull request #1113 from akohlmey/more-codeowners
Expand the list of code owners for more automated review requests
2018-09-06 20:59:07 -04:00
8f8aee65d2 cmake: fix globbing of emacs files
Done by: sed -i '/GLOB/s@/\*\.@/[^.]*.@g' CMakeLists.txt
2018-09-06 14:52:49 -06:00
d7b00f86f8 cmake: fix Eigen3 detection
For some reason FindEigen3.cmake defines all cap. variables, i.e.
Eigen3_FOUND -> EIGEN3_FOUND
2018-09-06 14:18:31 -06:00
efd582fb21 update list of code owners for automatic review requests. started assigning core files 2018-09-06 13:13:20 -04:00
b915716b60 fix inconsistency resulting from error in auto-replace macro 2018-09-06 12:27:10 -04:00
b3079f3aec rename files and classes for pair style eam/cd/omp to follow the rename of the non-threaded classes 2018-09-06 12:07:25 -04:00
84657f1531 final pass at sprintf() buffer overflow prevention. also fix typo in previous commit 2018-09-06 12:00:04 -04:00
db510af582 more fixes for potential buffer overflows by using snprintf() instead of sprintf() 2018-09-06 11:32:44 -04:00
9c27548a5c more replacing of sprintf() with snprintf() 2018-09-06 10:45:48 -04:00
4d52cb9245 more buffer overflow avoiding through using snprintf() 2018-09-06 09:57:43 -04:00
fbc1c1cfdd replace fixed buffer sprintf() with straight fprintf() 2018-09-06 09:57:10 -04:00
ca04e8f31c use snprintf() in a bunch of cases to avoid overflowing fixed size buffers with unchecked strings 2018-09-06 02:57:53 -04:00
ba1c5d3191 Avoid buffer overflow during errors with long filenames 2018-09-05 21:39:09 -04:00
0b951840f2 Merge pull request #1103 from rbberger/cmake-fix-user-omp
cmake: add missing fix_omp.h and fix_omp.cpp to compilation
2018-09-05 21:27:24 -04:00
95c3d2fc8e Merge pull request #1051 from stanmoore1/data_dup
Add data duplication option to the KOKKOS package
2018-09-05 17:09:09 -06:00
ad498811b1 cmake: add missing fix_omp.h and fix_omp.cpp to compilation 2018-09-05 16:04:35 -04:00
510e09f4ef patch 5Sep18 patch_5Sep2018 2018-09-05 13:39:18 -04:00
5003354fba Replaced a tab with whitespace. 2018-09-05 11:42:48 -04:00
9b38a5b359 Replaced gpu Makefile with the one from upstream so as not to delete it. 2018-09-05 11:39:41 -04:00
1c8feed69f Removed gpu makefile from wrong branch. 2018-09-05 11:38:04 -04:00
84de0d38ea Replaced files with those from upstream. 2018-09-05 11:34:07 -04:00
c192236a7e Commit before switching to old master. 2018-09-05 11:28:06 -04:00
779f1bd0b1 Fixes a bug in pair_morse_smooth_linear where the cutoff was not properly initialized. 2018-09-05 11:27:10 -04:00
a28990ed8d Merge pull request #989 from rhalver/ScaFaCoS
[Feature Contribution] Scafacos
2018-09-05 11:24:13 -04:00
0c92c22755 moved contents of USER-MOP package to USER-MISC as suggested by @sjplimp 2018-09-05 10:56:12 -04:00
4a5e28af81 Avoid unnecessary sorting in print_columns
std::map is a sorted associative container. We don't need to
first copy it into a vector and sort that one.
print_columns has been refactored as a template function and
makes use of this property.
2018-09-05 10:35:47 -04:00
d3d16882ca remove note for Rene 2018-09-05 08:12:19 -06:00
ae7b18fb77 only one call to extract needed 2018-09-05 00:11:50 -06:00
efd81a2854 Merge branch 'master' into bond/react-efficient-competing_reactions 2018-09-04 22:34:04 -06:00
a5f7b418de bond/react: efficient competing reactions 2018-09-04 22:06:49 -06:00