Commit Graph

6207 Commits

Author SHA1 Message Date
ca1e1e2dff Convert British spelling to American 2020-03-18 23:09:23 +09:00
649a8cc01a Fix typo 2020-03-14 13:57:48 +09:00
010b1f7434 more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
524b37598f correct various misspelled words and remove corresponding false positives 2020-03-12 06:25:42 -04:00
1372c20d94 Merge branch 'DOI' of github.com:e-kwsm/lammps into doc-cleanup 2020-03-12 05:43:44 -04:00
8af9d40392 Update DOI resolver
https://www.doi.org/doi_handbook/2_Numbering.html#htmlencoding
2020-03-12 16:53:24 +09:00
23a402ddd3 convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
c6f846b925 converter tool for inlining external math is no longer needed 2020-03-12 01:20:30 -04:00
7e656b6cea convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
2775ebeb9d update trilinos URL 2020-03-12 00:47:00 -04:00
8a799c4b5f update cslib URLs to use https:// 2020-03-12 00:46:50 -04:00
30817162b9 update moltemplate URL to https:// 2020-03-12 00:42:23 -04:00
2c3d196ce8 remove broken link 2020-03-12 00:41:57 -04:00
3317f90940 update plumed URLs to use https:// 2020-03-12 00:32:44 -04:00
b961aa0542 update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
6dd9a507ef update PyMol URLs 2020-03-12 00:21:20 -04:00
23569e67a0 update Ensight URL 2020-03-12 00:20:59 -04:00
e58aeebcce update URLs for pizza.py homepage 2020-03-12 00:13:58 -04:00
667c9f2a9f update AtomEye related URLs 2020-03-12 00:08:57 -04:00
d0f57289fc finish updating docs for fixes using code-block plus a few other improvements 2020-03-11 12:58:57 -04:00
5029bc9e1e more conversions from parsed-literal to code-block 2020-03-11 10:19:19 -04:00
8546bb51bf Layout images so they show up side-by-side in html and pdf and adapt to screen/paper size 2020-03-11 10:18:48 -04:00
1f4725d652 replace parsed-literal with code-block where appropriate. typeset keywords in cursive 2020-03-10 16:54:04 -04:00
2d329a8b76 typeset symbols in water model howtos 2020-03-10 16:20:52 -04:00
ae9255e057 collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
e643e88913 remove trailing whitespace from documentation sources 2020-03-10 15:51:06 -04:00
5ffc12ffc0 Merge remote-tracking branch 'github/master' into collected_small_fixes 2020-03-10 15:16:07 -04:00
b9ff623c16 Merge pull request #1920 from jguenole/fire-debug
fire bug fix to avoid crashes due to lost atoms
2020-03-10 15:08:58 -04:00
66c019e78b more explicitly describe how force/virial depend on random numbers 2020-03-10 06:43:13 -04:00
a0fb7c812c Merge branch 'master' into collected_small_fixes 2020-03-09 10:53:42 -04:00
740717d114 add false positives 2020-03-09 10:00:14 -04:00
a6086c279b rename USER-MESO package to USER-MESODPD and update related files and folders 2020-03-09 09:48:49 -04:00
45902772b7 Merge branch 'minimizer' of github.com:yafshar/lammps into collected_small_fixes 2020-03-09 09:15:40 -04:00
ddc36973f0 final reference info 2020-03-06 14:55:52 +01:00
21f2ec3a25 Merge branch 'master' into bond/react-new-examples-and-package 2020-03-05 20:08:19 -07:00
8c48a27c1d fix another display issue in pair style srp docs 2020-03-05 15:39:13 -05:00
c38380afc2 bugfix and small tweak for pair style srp docs 2020-03-05 15:36:15 -05:00
1fb54c307c Merge pull request #1918 from akohlmey/collected-small-fixes
Collected small fixes for the next patch
2020-03-05 15:16:50 -05:00
54a37aa4ef fix spelling issue 2020-03-05 14:43:22 -05:00
fb3a8f5bb1 Merge pull request #1909 from giacomofiorin/colvars-update
Update Colvars to version 2020-02-27
2020-03-05 10:18:01 -05:00
6786efa224 Merge commit 'refs/pull/1916/head' of github.com:lammps/lammps into collected-small-fixes 2020-03-04 17:04:45 -05:00
14d17b3513 clean the superfluous newline
I believe this newline in the document is superfluous.
2020-03-04 16:41:27 -05:00
7bbf070757 document new C++ and CMake requirements in manual 2020-03-04 14:37:51 -05:00
e9544218e6 some corrections to the building the manual documentation 2020-03-04 14:14:12 -05:00
3eeb7547b5 step version string for next patch and stable version 2020-03-03 07:25:18 -05:00
7d598ba8d7 synchronize list of hardware architectures supported by KOKKOS with list in cmake file 2020-03-03 03:33:23 -05:00
a4a5d24a69 add link to github support for subversion clients 2020-03-03 03:19:25 -05:00
8f608f6a35 lo-level -> low-level 2020-03-01 10:30:06 -05:00
ff614957c6 encode some more mathematical expressions and symbols 2020-03-01 09:25:20 -05:00
2455e35fd8 typeset mixing rules with embedded math 2020-03-01 08:51:29 -05:00