Commit Graph

31677 Commits

Author SHA1 Message Date
ca4f7b6579 Merge pull request #3399 from akohlmey/lookup-molecules
Refactor access to molecule templates
2022-08-17 15:29:11 -04:00
6e8db537c9 Merge pull request #3400 from vpalkar/unit-tests
Adding unit tests and improving errors in region commands
2022-08-17 13:19:27 -04:00
9c211d836c Merge pull request #3403 from crackboy88/improve-errors
improve error messages
2022-08-17 12:21:40 -04:00
180e0125ce Improved fix wall/reflect changes 2022-08-17 08:38:43 +08:00
d8706ab0cb Merge branch 'unit-tests' of github.com:vpalkar/lammps into unit-tests 2022-08-16 17:03:11 -04:00
5cdc09d9c7 updated region_intersect and region_union to use utils missing cmd args 2022-08-16 16:59:12 -04:00
559ced9869 updated error messages and test for region.cpp 2022-08-16 16:52:19 -04:00
0b047ba22b improved error messages in fix_addforce,fix_indent,fix_setforce,fix_temp_rescale,fix_wall_reflect and thermo.cpp 2022-08-16 20:33:22 +08:00
3f9daa8608 whitespace fixes 2022-08-15 21:48:01 -04:00
bec86f3f04 added some death tests and more readable code for some error messages 2022-08-15 16:16:48 -04:00
43726c020a Merge pull request #3394 from crackboy88/improve-errors
Improve errors
2022-08-15 15:47:47 -04:00
000c63a7ce improved error messages for some more region commands 2022-08-15 15:12:26 -04:00
c1f81eb640 improved error messages in a bunch of region commands 2022-08-15 15:04:18 -04:00
8c83e1f047 Merge pull request #3401 from efposadac/modernize-legacy
Modernize legacy API calls
2022-08-15 14:56:57 -04:00
eb600c7b9d Merge branch 'lammps:develop' into modernize-legacy 2022-08-15 10:55:59 -04:00
d9320c61bb adding test for fix wall/region 2022-08-15 02:13:05 -04:00
bf8ff3a8ca improved error messages for region cylinder 2022-08-14 23:27:55 -04:00
d047053473 improved some error messages in compute_msd,fix_indent and fix_nh.cpp 2022-08-15 10:51:29 +08:00
29998775f0 Added a test for region clyinder with an open face 2022-08-14 22:48:42 -04:00
89f32e43dc update unit test for changed error message 2022-08-13 23:02:04 -04:00
3292ee8299 Fixed the last change to modify_params function 2022-08-14 10:21:49 +08:00
f592e3184e simplify Molecule::check_attributes() 2022-08-13 16:56:53 -04:00
1de66a82de add tests for new API 2022-08-13 16:02:58 -04:00
3c744772b8 add new api to access molecules. 2022-08-13 16:02:50 -04:00
d599a541b5 improved some error messages in velocity.cpp and dump.cpp 2022-08-13 19:10:57 +08:00
1fc9c31db5 Merge branch 'lammps:develop' into improve-errors 2022-08-13 09:36:27 +08:00
98593b4ad5 Improved from last revision of neighbor.cpp 2022-08-13 08:35:20 +08:00
0222da9f2b Merge pull request #3393 from akohlmey/test-amoeba
Add force style test for amoeba angle style and fix related bug
2022-08-12 15:05:13 -04:00
dd110176d1 Merge pull request #3395 from akohlmey/fix-reaxff-species-update
Fix reaxff/species update for dynamic groups and empty groups
2022-08-12 14:49:26 -04:00
09b3cbafdc correctly handle the case where there are no atoms in the fix group 2022-08-12 10:46:07 -04:00
12c28c393d support dynamic groups, but only if nrepeat == 1 2022-08-12 10:45:35 -04:00
923976f154 Merge remote-tracking branch 'refs/remotes/origin/improve-errors' into improve-errors 2022-08-12 12:18:02 +08:00
6d624b782d made some changes on neighbor.cpp 2022-08-12 12:12:22 +08:00
c869a7aac2 update OpenMP suppressions for gcc-12 2022-08-11 23:36:25 -04:00
1c63159a80 add test input for amoeba angle style 2022-08-11 22:54:42 -04:00
e5219e6a10 fix bug in energy tally for 4-atom angle term 2022-08-11 22:50:57 -04:00
6e8c24372e Merge branch 'lammps:develop' into improve-errors 2022-08-11 19:19:13 +08:00
af1c772157 made some changes on minimize.cpp 2022-08-11 19:08:11 +08:00
208caacb89 Merge pull request #3390 from hammondkd/fortran2_updates
Fixed a bug (xz and yz reversed) in LAMMPS.F90 and changed mpif90 to …
2022-08-10 20:49:17 -04:00
b565d10a3d Merge pull request #3388 from chemshift/mliap-bug-3204
Mliap bug 3204
2022-08-10 19:33:59 -04:00
c9c3f68bdf Merge pull request #3387 from akohlmey/collected-small-changes
Collected small changes and bug fixes
2022-08-10 18:34:52 -04:00
f1cca7d37d Update __init__.py 2022-08-10 12:22:29 -06:00
15261aaa71 Fixed a bug (xz and yz reversed) in LAMMPS.F90 and changed mpif90 to mpifort in README for files in examples/COUPLE/fortran2 2022-08-10 11:11:27 -05:00
e592f0f139 clarify the function of -nonbuf a bit more 2022-08-10 07:03:57 -04:00
631f33feb5 remove redundant calls 2022-08-10 06:57:59 -04:00
3a4a0078cd whitespace 2022-08-09 16:51:48 -04:00
6eb51a68d9 move dump command after reset_timestep to avoid crash 2022-08-09 16:51:48 -04:00
c8b6b052fc port sorting by time to python 3 while retaining compatibility with 2.7 2022-08-09 16:51:48 -04:00
111caac960 remove references to Numeric module. we only support numpy. 2022-08-09 16:11:09 -04:00
5c589dbe20 add -nonbuf / -nb command line flag to disable buffering for screen and logfile 2022-08-09 15:52:47 -04:00