Commit Graph

11157 Commits

Author SHA1 Message Date
cd61cfe8c7 SNAP optimizations, taking advantage of improved data layouts, scratch memory, and hierarchical parallelism. 2020-03-03 13:02:04 -05:00
d242051c8e Merge pull request #1898 from akohlmey/next_lammps_version
Update version info for next release candidate
2020-02-27 14:38:08 -05:00
6e7e365981 Merge pull request #1888 from lammps/release-preparation
Documentation and Build script and Info updates for stable release
2020-02-27 13:23:08 -05:00
704207f3c8 Finalize Kokkos on error exit 2020-02-27 08:51:02 -07:00
2d2cb46dc0 move release date 2020-02-27 08:58:09 +01:00
7bd3215226 Merge pull request #1894 from stanmoore1/kk_snap_chunk
Make Kokkos pair SNAP chunksize variable user-settable
2020-02-26 15:27:37 -05:00
275626a1de re-enable perpertual neighborlist for compute entropy/atom if avg flag is used only 2020-02-26 13:57:11 -05:00
49b07a2360 Keep original chunksize value set by user in case atom count changes 2020-02-26 09:42:59 -07:00
a828facbd8 Merge pull request #1900 from akohlmey/couple-lammps-plugin
Example for loading LAMMPS as a plugin from a shared library
2020-02-26 10:40:24 -05:00
37e6fd1bae Merge pull request #1901 from stanmoore1/compea_neigh
Change compute entropy/atom to use occasional neigh list
2020-02-26 10:39:37 -05:00
dcb83d41af Merge pull request #1899 from agiliopadua/thole
Added safeguard to thole pair styles
2020-02-26 07:44:04 -05:00
e766518062 Merge pull request #1896 from pmla/user-ptm-group-fix
Apply compute group correctly for compute ptm/atom
2020-02-26 07:28:01 -05:00
f81b963a8a more strict argument checking and initializing output data to zero 2020-02-26 13:12:39 +01:00
526c9a548f need to set single_enable to 0 after single() was removed 2020-02-26 12:58:10 +01:00
91c31da576 remove trailing whitespace 2020-02-26 12:52:21 +01:00
e083f38c59 Merge pull request #1892 from sef43/master
temper timeout synchronization fix
2020-02-25 13:26:30 -05:00
4180b4a7d6 add example to COUPLE folder demonstrating loading LAMMPS as a plugin. 2020-02-25 19:07:49 +01:00
eb51511ddf Change compute entropy/atom to use occasional neigh list 2020-02-25 10:48:00 -07:00
7acba4584d added group2ID 2020-02-25 18:05:36 +01:00
00137765a8 Delete fix_propel_self.h 2020-02-25 17:17:13 +01:00
cdfb1d5026 Delete fix_propel_self.cpp 2020-02-25 17:16:59 +01:00
6956dc1a33 Added safeguard to thole pair styles 2020-02-25 16:50:49 +01:00
26f11f19a7 update LAMMPS version string 2020-02-25 15:04:56 +01:00
3168c1116f fixed group selection 2020-02-25 14:16:21 +01:00
bf62646977 add check for required atom properties to USER-SDPD 2020-02-25 14:08:55 +01:00
1b7a8d8875 Make Kokkos pair_snap chunksize user-settable 2020-02-24 12:53:01 -07:00
f1ad4ed66b update the internal timeout clock across replica when we stop parallel tempering 2020-02-23 05:09:25 -05:00
c3fc680ccd apply timeout bugfix to temper variants in USER-MISC 2020-02-23 05:04:21 -05:00
d226f5d02c cosmetic changes 2020-02-23 05:03:50 -05:00
35483a95cd temper timeout synchronization fix 2020-02-22 23:39:59 +00:00
94d1aa45bb add "make mode=print <machine>" to print out compiler and linker flags and libs for any available makefile 2020-02-19 18:11:34 +01:00
960553db58 remove C++11 check for stable release 2020-02-17 15:09:24 -05:00
ad125bf36a Merge pull request #1881 from akohlmey/next_lammps_version
Update version string for next patch release
2020-02-17 14:53:17 -05:00
f9bee338dd Merge pull request #1875 from akohlmey/collected-small-fixes
Collected small bug fixes and updates
2020-02-17 11:40:27 -05:00
f4b64e8d91 fix typo in comment 2020-02-14 18:29:11 -05:00
07c5adc57a we need more specific matches to correctly handle TIME and TIMESTEP items 2020-02-14 16:07:34 -05:00
381ac888c8 initialize cut_respa to NULL in constructor to avoid uninitialized access 2020-02-14 15:51:38 -05:00
9bff431553 make sure coulomb tables are initialized in all coul/long GPU pair styles 2020-02-14 15:50:49 -05:00
0b57549f4c must generate coulomb tables with pair style lj/class2/coul/long/gpu 2020-02-14 15:34:12 -05:00
c23f164639 Increase portability to more C++ compilers 2020-02-14 13:40:31 -05:00
d7a7c103ca Update version string for next patch release 2020-02-14 09:55:56 +01:00
076c28538c Merge branch 'read_dump_item_time' of https://github.com/mkanski/lammps into collected-small-fixes 2020-02-13 13:13:24 -05:00
7c62bce7d9 Enable reading dump file with ITEM:TIME 2020-02-13 18:13:22 +01:00
4cacc4701d update plumed support to include version 2.6.0. Fix bug in API check 2020-02-13 16:03:58 +01:00
ed9c8b4ea0 reset Modify::n_timeflag in post_run() so we won't skip computes defined between runs 2020-02-11 00:30:09 -05:00
23b7adc9b2 we must defer to Modify::addstep_compute_all() if Modify::addstep_compute() if n_timeflag has not been set 2020-02-11 00:06:41 -05:00
ec3e687b0c fix bug in set type/ratio when operating on subsets 2020-02-10 16:22:23 -05:00
f0935feabe Merge pull request #1868 from akohlmey/next_patch_version
Step version strings for next patch release
2020-02-03 11:50:12 -05:00
73364404a1 Step version strings for next patch release 2020-02-03 07:18:31 -05:00
2b6a022309 Merge branch 'master' into fft-consistency 2020-01-31 20:51:58 -05:00