Commit Graph

30988 Commits

Author SHA1 Message Date
cf942e7d5f may check for MPI library Fortran support only if MPI is enabled 2022-06-23 15:54:04 -04:00
ae18e1e01c Merge pull request #3310 from akohlmey/next_patch_release
Update version strings for the next patch release
patch_23Jun2022
2022-06-22 16:26:46 -04:00
ad35bbcb65 Merge pull request #3309 from akohlmey/collected-small-fixes
More fixes and small changes for the stable release
2022-06-22 15:16:01 -04:00
1099199e93 remove any remap related documentation. add paragraph about file compatibility 2022-06-22 14:22:23 -04:00
c5999df303 remove dead code and silence compiler warning about it 2022-06-22 10:32:03 -04:00
9b8c19c1a5 correct docs about how to get synchronized timings 2022-06-22 10:24:56 -04:00
2fb3608462 update/correct contact info 2022-06-22 07:06:16 -04:00
37f056c455 get array and vector sizes from the avaiable APIs 2022-06-22 07:06:00 -04:00
49331be33e simplify 2022-06-22 07:05:30 -04:00
3f6add4c40 Merge branch 'fortran2_updates' of github.com:hammondkd/lammps into collected-small-fixes
# Conflicts:
#	examples/COUPLE/fortran2/LAMMPS-wrapper.cpp
#	examples/COUPLE/fortran2/LAMMPS-wrapper.h
2022-06-22 06:41:37 -04:00
c0b109f715 Fixed some typos and updated e-mail addresses in examples/COUPLE/fortran2 2022-06-21 20:53:45 -05:00
b0c673d856 updates from Karl Hammond to adjust his email and correct an error message 2022-06-21 20:37:20 -04:00
b0f4ef8a39 update docs for noremap option to read_restart 2022-06-21 20:19:13 -04:00
7d49ad5924 enable remap for restarting by default, add noremap option 2022-06-21 19:42:17 -04:00
6815b27cd5 step version strings for the next patch release 2022-06-21 08:52:11 -04:00
ad20e54638 fix typos 2022-06-20 23:19:00 -04:00
ec46510d2e add local extract_compute() tests 2022-06-20 23:07:01 -04:00
033af0c507 add unit test for extracting local vector and array via numpy 2022-06-20 18:48:50 -04:00
78129f9078 update embedded docs for LMP_SIZE_VECTOR update for extract_compute() 2022-06-20 18:23:20 -04:00
ac615059a7 update some linewraps for 100 col limit 2022-06-20 18:15:02 -04:00
ffc5b12c5f correct handling data of local computes which always needs to check rows and cols 2022-06-20 18:10:57 -04:00
3828c857f7 accept LMP_SIZE_VECTOR as alias for LMP_SIZE_ROWS with local computes 2022-06-20 18:10:19 -04:00
063fc47f64 tweak to avoid test failure on FreeBSD 2022-06-19 06:38:14 -04:00
f831a776be correct python example 2022-06-18 22:25:32 -04:00
b46773e398 add support for writing a dump file footer 2022-06-17 15:53:04 -04:00
fe1feb58d8 Merge pull request #3306 from akohlmey/makewheel-fix
Fix issues with building a wheel file during 'make install-python'
2022-06-17 11:58:18 -04:00
deac9f05b1 move the created wheel to the build folder at the end 2022-06-17 08:05:28 -04:00
18f9e5836b support installing the built wheel into virtual environment, if active 2022-06-17 06:52:25 -04:00
21b3020a97 make the "makewheel.py" script independent from the activate_this.py script
The "activate_this.py" script only seems to be included in virtualenv,
but not venv. Now we implement its effect directly.
2022-06-17 00:10:06 -04:00
dd3aab0c66 Merge pull request #3300 from lammps/doc-package-update
Update package affiliation for Zhen Li
2022-06-16 18:04:45 -04:00
58152cdc68 Merge pull request #3304 from lammps/dependabot/github_actions/actions/cache-3
Bump actions/cache from 2 to 3
2022-06-16 17:48:30 -04:00
04bb611bf2 Merge pull request #3303 from lammps/dependabot/github_actions/actions/setup-python-4
Bump actions/setup-python from 2 to 4
2022-06-16 17:21:53 -04:00
2fc0a44ab2 Bump actions/cache from 2 to 3
Bumps [actions/cache](https://github.com/actions/cache) from 2 to 3.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v2...v3)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-06-16 19:41:23 +00:00
ba4cbf7055 Bump actions/setup-python from 2 to 4
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](https://github.com/actions/setup-python/compare/v2...v4)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
2022-06-16 19:41:20 +00:00
f75115d801 Merge pull request #3301 from turrisxyz/Dependabot-GitHub-Actions
Included githubactions in the dependabot config
2022-06-16 15:40:59 -04:00
0a5d921f3f update affiliation in source code as well 2022-06-16 15:37:55 -04:00
cdc0b48a0b chore: Included githubactions in the dependabot config
This should help with keeping the GitHub actions updated on new releases. This will also help with keeping it secure.

Dependabot helps in keeping the supply chain secure https://docs.github.com/en/code-security/dependabot

GitHub actions up to date https://docs.github.com/en/code-security/dependabot/working-with-dependabot/keeping-your-actions-up-to-date-with-dependabot

https://github.com/ossf/scorecard/blob/main/docs/checks.md#dependency-update-tool
Signed-off-by: naveen <172697+naveensrinivasan@users.noreply.github.com>
2022-06-16 01:33:01 +00:00
9840aad703 Merge pull request #3299 from akohlmey/fix-codeql-workflow
Update GitHub workflow files
2022-06-15 10:49:58 -04:00
1403a0dd94 update affilication for Zhen Li 2022-06-15 08:22:59 -06:00
9842879db1 fix typos 2022-06-15 08:14:53 -04:00
03c0b4ae27 upgrade action versions 2022-06-14 19:08:28 -04:00
728e4a5910 add permissions for codeql action 2022-06-14 19:08:01 -04:00
cfe5025495 Merge pull request #3296 from akohlmey/collected-small-changes
Collected small changes for the next release
2022-06-14 18:18:28 -04:00
927287e3e5 fixes from clang-tidy 2022-06-14 14:06:11 -04:00
35a48f273b rename local variable shadowing a global one 2022-06-14 10:45:31 -04:00
2028c68bec remove unused imports 2022-06-14 10:45:05 -04:00
6abb316dba avoid resource leak 2022-06-14 10:36:21 -04:00
7a64d1358e remove unused module 2022-06-14 10:36:11 -04:00
26dcb649bb remove redundant check 2022-06-13 22:10:51 -04:00
423c511d7a use explicit scoping in destructor 2022-06-13 22:10:43 -04:00