12fe614ddf
Added sequence-dependent stacking and base-pairing strength
2017-09-05 10:48:38 +01:00
da01be7c18
More robust change from initial to target restraint centers in Colvars
2017-08-10 09:22:53 -04:00
ee6cac826e
Update Colvars to version 2017-07-15 and support automated builds for it
2017-07-19 14:24:07 -04:00
8afed61db1
Upgrade to oxDNA2
2017-03-28 18:16:36 +01:00
7435084375
Verified oxDNA with modified nucleotide layout
2017-03-22 15:59:10 +00:00
7a75cd111c
Minor updates in documentation and setup tool, merge before upgrade to oxDNA2
2017-03-14 11:39:09 +00:00
23b8287933
Updated documentation and simple setup tool
2017-03-14 11:36:44 +00:00
f70752c18f
Include PDF of Colvars doc missing in previous commit
2017-03-10 15:58:35 -05:00
5fe6206638
Update Colvars module to version 2017-03-10
2017-03-10 09:16:58 -05:00
149f37e764
Corrected reference to Fig.1
2017-01-26 19:08:59 +00:00
96259ea2d2
Added source code and documentation for USER-CGDNA
2017-01-13 13:36:54 +00:00
f553e230db
Update Colvars library to version 2016-12-22
...
Significant code cleanup and several fixes (walls + extended Lagrangian)
New harmonicWalls bias to apply confining boundaries with time-dependent force
constant & integration
2016-12-27 13:17:34 -05:00
f8367e3d0f
update documentation pdf for updated colvars lib
2016-10-24 17:49:53 -04:00
6d200061ca
update colvars library to version 2016-09-30
2016-09-30 08:15:44 -04:00
b190abea39
sync with GH
...
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15561 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-09-08 20:20:32 +00:00
1587bdf2f1
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15316 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-07-15 22:26:00 +00:00
46a9fe58aa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15197 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-06-17 23:02:30 +00:00
7ce9b111eb
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15046 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-12 14:17:32 +00:00
551feff776
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14976 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-09 22:05:30 +00:00
410c743f77
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14971 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-09 21:11:20 +00:00
1cf54d01f4
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14950 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-09 17:22:38 +00:00
