Commit Graph

27338 Commits

Author SHA1 Message Date
d292da78ca address CodeQL warnings and reformat with clang-format 2021-07-27 12:29:44 -04:00
f7f85822a9 move some more computes from EXTRA-COMPUTE back to src because of dependencies 2021-07-27 12:07:27 -04:00
ec069595f7 move compute orientorder/atom because compute coord/atom depends on it 2021-07-27 11:16:40 -04:00
2d488bab6b Merge branch 'master' into collected-small-changes 2021-07-27 11:15:00 -04:00
dab884fd1f Merge pull request #2829 from akohlmey/package-reorganization2
Package reorganization (step 2)
2021-07-27 10:55:32 -04:00
f39c5178d8 update plumed to version 2.7.2 and drop workaround for 2.7.1 2021-07-27 09:56:52 -04:00
16fae72670 small tweak for MinGW-64 compilation on Fedora 34 2021-07-27 08:44:59 -04:00
829bc8a617 update equation for updated NEB code 2021-07-26 18:45:37 -04:00
cca17feb27 silence compiler warnings, remove dead code 2021-07-26 12:31:09 -04:00
1fa621d02d correct quoted screen output 2021-07-25 21:18:52 -04:00
ef244c3061 small updates to the introduction 2021-07-25 21:05:33 -04:00
7e6a06b1cc update Pizza.py URLs 2021-07-25 21:04:26 -04:00
0513ba2df5 spelling 2021-07-25 20:28:14 -04:00
5a79429f03 fix up some more package designations and clean up some legacy formatting 2021-07-25 20:23:37 -04:00
18b1e10be8 Merge branch 'master' into package-reorganization2 2021-07-25 19:21:47 -04:00
1ebd60e35e update and add explanation 2021-07-25 10:56:38 -04:00
afc54639c4 update references to USER-MISC package 2021-07-25 10:42:35 -04:00
41db4235d6 update package names for pair style moved away from USER-MISC 2021-07-25 10:28:40 -04:00
513e792ece fix required package message 2021-07-25 10:15:15 -04:00
9d9b089700 get rid of references to USER-MISC in the general discussion 2021-07-25 10:03:16 -04:00
9d162d865a move pimd to REPLICA 2021-07-25 09:59:56 -04:00
2e4119dca7 update package list and details for newly created packages and removed USER-MISC 2021-07-24 21:01:19 -04:00
f192102da9 move examples away from USER-MISC now that the package folder is gone 2021-07-24 20:53:23 -04:00
57270c5339 set flag to tell CMake to not use/link the MPI C++ interface in the correct place 2021-07-24 13:46:13 -04:00
add7565d9f recover unit test compilation 2021-07-23 18:24:40 -04:00
852f18525d complete moving packages and styles around 2021-07-23 18:11:25 -04:00
0de2167fb6 Merge pull request #2846 from stanmoore1/mpich
Add logic for GPU-enabled MPICH to Kokkos package
2021-07-23 14:42:18 -04:00
1bc0a5ca8a Merge branch 'master' of github.com:lammps/lammps into mpich 2021-07-23 10:28:28 -06:00
c587252894 rename unittest YAML files 2021-07-23 12:13:50 -04:00
25aa202976 tweak epsilon to pass reaxff unittests on macOS 2021-07-23 12:12:57 -04:00
594bf56ee3 silence compiler warnings on macOS 2021-07-23 12:12:40 -04:00
fd3be6176d remove dead code 2021-07-23 08:36:23 -04:00
d2684a2370 Merge branch 'master' into package-reorganization2 2021-07-23 07:41:10 -04:00
8889fa316e Merge pull request #2837 from akohlmey/fix-external-python-support
Update and document support for fix external in the library interface and python module
2021-07-23 07:30:47 -04:00
c33bead8b1 silence static code analysis warning 2021-07-22 23:26:22 -04:00
ff7f2e78a1 Merge branch 'master' into fix-external-python-support 2021-07-22 23:09:54 -04:00
320f7da91a Merge pull request #2708 from akohlmey/refactor-reaxff-parser
Refactoring and improving REAXFF and QEQ packages
2021-07-22 23:04:09 -04:00
c8cc5ecb9f implement setting per-atom virial from numpy array (thanks to stackoverflow) 2021-07-22 22:50:05 -04:00
a078d1ba53 check energy and virial per atom arrays for correct size 2021-07-22 22:49:16 -04:00
9066495d78 Merge pull request #2838 from kipbarrett/pair_rann
plugged memory leaks in ml-rann package. Resolves [2811]
2021-07-22 22:04:39 -04:00
bf8bde5b03 implement numpy wrapper for setting per-atom energy. virial not yet implemented 2021-07-22 16:59:04 -04:00
d0a654097f Merge branch 'collected-small-changes' into refactor-reaxff-parser 2021-07-22 16:46:07 -04:00
fbf3bcae70 correct automated substition mistake 2021-07-22 16:45:30 -04:00
74c306b32b whitespace 2021-07-22 16:37:06 -04:00
324ae3181b python interface for per-atom data for fix external 2021-07-22 15:27:51 -04:00
d3e19aa430 Merge branch 'info-create-atoms' of github.com:athomps/lammps into collected-small-changes 2021-07-22 15:00:21 -04:00
d211cea898 bugfix from Dan Bolintineanu. closes #2812 2021-07-22 14:58:33 -04:00
2d93edab1b Added one line of diagnostic output to create_atoms command 2021-07-22 12:22:34 -06:00
bb46dd7d1f update embedded documentation for the library interface functions for accessing fix external 2021-07-22 13:14:49 -04:00
fde6cae56d Add logic for GPU-enabled MPICH 2021-07-22 08:44:32 -06:00