Commit Graph

17038 Commits

Author SHA1 Message Date
cf3aee9083 bond/react doc tweaks 2018-12-03 20:12:38 -07:00
45b6b4bf52 Merge branch 'python-script-portability' into collected-post-stable-patches 2018-12-03 19:47:37 -05:00
be721fe75a more Install.py refactoring 2018-12-03 19:47:10 -05:00
4168855ba3 reduce distracting nvcc (or rather ptxas) verbosity 2018-12-03 19:27:03 -05:00
4adbacf8e5 Merge branch 'python-script-portability' into collected-post-stable-patches 2018-12-03 19:14:47 -05:00
d603d084c4 Fix typo, whitespace cleanup 2018-12-03 18:12:10 -05:00
46c0be57de Restore deleted deps file (if deletion is intentional, please delete again) 2018-12-03 18:08:27 -05:00
db2c8887cf Merge branch 'python-script-portability' into collected-post-stable-patches 2018-12-03 17:50:47 -05:00
e5c555fa7d consolidate shared code from various Install.py files into install_helpers.py 2018-12-03 17:50:20 -05:00
ee82143a29 more false positives to handle 2018-12-03 16:21:18 -05:00
a0bd1bd755 fix typo 2018-12-03 16:12:32 -05:00
aeb7854aca update false positives list for newly added documentation 2018-12-03 16:11:39 -05:00
ac51d0fb89 remove old versions of read_dump and rerun w/o parallel reading support 2018-12-03 15:32:43 -05:00
22f99be57e Merge remote-tracking branch 'github/read-dump-parallel' into collected-post-stable-patches
# Conflicts:
#	src/read_dump.cpp
2018-12-03 15:28:34 -05:00
55077cea4d Merge branch 'lebedeva2' of https://github.com/zbych127/lammps into collected-post-stable-patches 2018-12-03 15:24:31 -05:00
98728cddbe Merge remote-tracking branch 'devel/python-script-portability' into collected-post-stable-patches 2018-12-03 15:18:03 -05:00
e1aff27cd4 Merge remote-tracking branch 'devel/whitespace-cleanup' into collected-small-fixes 2018-12-03 15:06:23 -05:00
4af7e706d7 correctly compute hash for temporary directory used by manual building 2018-12-03 14:59:43 -05:00
1c795a6be3 remove trailing blanks 2018-12-01 21:38:22 -05:00
d14404254e check for illegally deleted atoms 2018-12-01 15:18:11 -07:00
4ec05a3389 remove some more trailing whitespace 2018-12-01 08:14:02 -05:00
c69fc90588 detect more incompatible setups for fix tune/kspace, and document 2018-12-01 02:48:22 -05:00
53e66dcd15 bond/react: delete atoms
allows deleting of a user-specified set of atoms, based on topology
2018-11-30 22:35:10 -07:00
482e120af4 Merge pull request #35 from lammps/master
rebase
2018-11-30 21:36:01 -07:00
2e0d69b005 replace STL map with atom->map in special, better code comments 2018-11-30 13:06:31 -07:00
ab1c3f6498 rendevous comm option for special bonds and fix rigid/small 2018-11-30 11:54:48 -07:00
67041a5446 Merge pull request #1231 from lammps/update-log-files
Update log files for example inputs, part 1
2018-11-30 11:07:44 -05:00
f380a03a07 Merge pull request #1237 from akohlmey/compute-mop-bugfix
Make compute stress/mop and stress/mop/profile compatible with per-atom masses
2018-11-30 11:07:17 -05:00
7b68655c4d remove trailing whitespace 2018-11-30 08:00:08 -05:00
dd84b5c975 make compute stress/mop and stress/mop/profile compatible with per-atom masses 2018-11-30 07:50:57 -05:00
1f210a246e Merge pull request #1234 from lammps/read-dump-keep
bug-fix for miscounting atoms for read_dump add keep
2018-11-29 18:33:45 -05:00
5d2730f055 update log files for rigid, shear, snap, srd, streitz, threebody, vashsista, and voronoi examples 2018-11-29 18:22:18 -05:00
e4ca5b1889 Merge pull request #1232 from akohlmey/collected-small-fixes
First chunk of collected small fixes for the stable release
2018-11-29 18:19:12 -05:00
4e9b987fec bug fix in original read_dump for add keep atom count 2018-11-29 15:54:14 -07:00
f92e61c58d bug-fix for miscounting atoms for read_dump add keep 2018-11-29 15:37:58 -07:00
cda3227b05 plug memory leak in poems library 2018-11-29 16:41:11 -05:00
6705777f7b fix memory issue in POEMS library, where auxiliary data was cast to a data structure of different (smaller) size when deleting.
this commit adds support to a callback function that allows to delete aux data in the Tree with its native size.
2018-11-29 16:34:41 -05:00
4b8c6d40e2 update log files for qeq and rdf-adf examples 2018-11-29 15:15:14 -05:00
46bf4b7efb update log files for peptide, peri, pour and python examples 2018-11-29 14:51:25 -05:00
cef4164460 update log files for min, msst, nb3b, nemd, and obstacle examples 2018-11-29 14:13:11 -05:00
074a9663cb update log files for melt and micelle example 2018-11-29 14:05:28 -05:00
d67dad9d67 update log files for meam examples 2018-11-29 12:47:15 -05:00
41e24f6e8b update log files for gcmc example 2018-11-29 12:35:07 -05:00
e3ddefb38b update docs and header for removed error message 2018-11-29 02:03:56 -05:00
ea6d8a5dca replace hard crash with disabling atom sorting, when no suitable binsize is found 2018-11-29 01:38:04 -05:00
09abc0c75a Fix memory leak in Variable::compute_atom 2018-11-29 00:41:40 -05:00
6be4ce7137 found a new false positive word in docs with spellchecker 2018-11-28 23:14:45 -05:00
78f86d5f16 silence compiler warning about singed vs. unsigned 2018-11-28 22:23:09 -05:00
cb2964af4c silence compiler warning about unused parameter 2018-11-28 22:20:42 -05:00
c42776e4e1 ignore valgrind core dumps 2018-11-28 21:22:46 -05:00