Commit Graph

17038 Commits

Author SHA1 Message Date
fb4df86d3d Merge pull request #1170 from akohlmey/fix-merge-sort
Bug fix for merge sort by Jeffrey Frey
2018-10-29 18:47:50 -04:00
1bae30c295 liblammps.pc: add some more documentation 2018-10-29 06:57:46 -06:00
044507640f include Plumed.h with full path 2018-10-29 06:52:19 -06:00
bcc7a4c32f cmake: add PLUMED include dir 2018-10-29 06:36:47 -06:00
283096d1d5 update .gitignore 2018-10-29 03:50:55 -04:00
079134255d make sure class member "list" is initialized to NULL in constructor 2018-10-29 03:49:25 -04:00
25b425dbb0 no need to import the PLMD namespace globally 2018-10-28 22:21:35 -04:00
bee2cb96fa remove references to Plumed.cpp and Plumed.h 2018-10-28 22:18:27 -04:00
360aca581c remove last reference to voro++ 2018-10-28 21:56:49 -04:00
21661f84db Merge pull request #1181 from akohlmey/fixup-github-folder
Updates to contributing guidelines
2018-10-28 21:55:02 -04:00
a662afe970 fully integrate USER-PLUMED package into conventional build 2018-10-28 21:37:33 -04:00
3a082e227e remove obsolete and redundant files 2018-10-28 21:33:51 -04:00
54d728c0c7 reduce need for include files by adding forward declaration 2018-10-28 21:33:06 -04:00
ae499b980d make Plumed.cpp obsolete in USER-PLUMED code by inserting it into fix_plumed.cpp 2018-10-28 21:32:47 -04:00
925d6d37b9 adjust header inclusion to current LAMMPS conventions 2018-10-28 21:32:01 -04:00
bdf3764905 update user-plumed Install.sh file to fit better into LAMMPS, adjust to changes in lib folder 2018-10-28 21:31:40 -04:00
bfbf5695fd adjust path for includelink to find the Plumed.h wrapper properly 2018-10-28 21:30:37 -04:00
e788ffe210 Merge branch 'master' of github.com:gtribello/lammps into fix-plumed 2018-10-28 21:29:53 -04:00
3cc9384488 cmake: add support USER-PLUMED 2018-10-28 16:23:29 -06:00
a60b6d1ab8 add feature to python lib install script to support existing installation and use links 2018-10-28 18:12:32 -04:00
174b180a41 remove file that is not present 2018-10-28 18:12:02 -04:00
7bbd8644c8 rework some of the pull request instructions to be realigned with the recent changes in the workflow. 2018-10-28 08:50:37 -04:00
f36b7e38a8 correct link to github tutorial in CONTRIBUTING doc 2018-10-28 08:42:28 -04:00
f70af61b35 Added new version of Plumed wrapper 2018-10-28 09:27:22 +00:00
a2671f8943 doc files for new parallel dump file read capability 2018-10-26 18:06:34 -06:00
0a4007c55b add parallel file read capability to ReadDump 2018-10-26 17:37:50 -06:00
85c8877aeb make 2 copy of old read_dump and rerun for comparison to new 2018-10-26 17:31:42 -06:00
4fa78a78de Added instructions on PLUMED to build extras and Package details pages of manual 2018-10-26 22:12:17 +01:00
ff9f836be4 Merge remote-tracking branch 'upstream/master' 2018-10-26 22:01:05 +01:00
2e79d9f340 Merged Pablo's fixes into the plumed interface for lammps 2018-10-25 21:45:35 +01:00
2428c1c1f3 Merge pull request #1177 from lammps/modify-reorder
reorder operations in init() to fix a bug with compute chunk/atom del…
2018-10-25 10:55:14 -04:00
0e213b80e9 reorder operations in init() to fix a bug with compute chunk/atom deleting a fix 2018-10-25 08:23:10 -06:00
2c1f420a48 more tweaks 2018-10-24 13:43:26 -06:00
07f92d225e formatting tweak 2018-10-24 12:03:51 -06:00
7e5ec96bcd more tweaks from style check script 2018-10-24 12:02:36 -06:00
c8870f1b78 change intro to each list of commands 2018-10-24 11:57:34 -06:00
7069b52a44 Merge pull request #1172 from akohlmey/next-patch-release
Patch release 24 October 2018
patch_24Oct2018
2018-10-23 18:08:38 -04:00
45f28517ef Merge pull request #1174 from akohlmey/fix-kspace-refactor
Bug fix for Kspace refactoring in USER-INTEL package
2018-10-23 13:33:36 -04:00
fccc26758b Merge pull request #1152 from lammps/doc-adjust2
More Documentation consistency improvements
2018-10-23 13:05:04 -04:00
b6b6270716 fix bug reported in issue #1173 2018-10-23 11:58:00 -04:00
0293dee9b2 patch 24Oct2018 2018-10-23 11:03:51 -04:00
6107f00e9d Merge pull request #1164 from akohlmey/fix-halt-for-minimize
Enable use of fix halt for minimizations
2018-10-23 10:35:26 -04:00
1d38f2d725 Merge pull request #1165 from akohlmey/refactor-kspace-base-class
Refactor kspace base class to have a settings() method
2018-10-23 10:35:12 -04:00
4a5c14f60d Merge pull request #1148 from akohlmey/deprecated-styles
Implement dummy classes for deprecated and removed styles
2018-10-23 10:34:58 -04:00
aa27c8f733 convert double quotes to latex style 2018-10-23 09:17:00 -04:00
da38ae0370 apply fix for merge sort from issue #1163 by @jtfrey and re-enable it 2018-10-23 08:57:33 -04:00
527ec61586 Merge pull request #1169 from akohlmey/kokkos-parallel-for-workaround
Workaround for parallel_for() compilation issue with newer GNU compilers
2018-10-22 11:17:47 -04:00
8649081904 fix broken links in manual 2018-10-21 18:39:25 -04:00
c0dd187802 make sure all pictures are includes in epub/mobi files 2018-10-21 18:38:46 -04:00
3661836a3b Merge pull request #1168 from athomps/compute-adf
Created new compute ADF for angular distribution function
2018-10-20 20:57:38 -04:00