Commit Graph

36326 Commits

Author SHA1 Message Date
dba4d9ebbc Merge pull request #3855 from akohlmey/collected-small-changes
Collected small changes and fixes
2023-07-17 19:00:40 -04:00
3568cced4b update comment 2023-07-17 09:52:44 -04:00
27aa6898f8 modernize access for fixes and computes 2023-07-16 20:24:22 -04:00
89d82fde22 modernize access to list of fixes 2023-07-16 15:20:36 -04:00
fd0a72eab5 modernize and consolidate style across all three temper command variants 2023-07-15 12:37:12 -04:00
77bdcb3e19 small doc style update 2023-07-15 12:36:41 -04:00
baac049aed update LAMMPS input file syntax highlighting for recent changes 2023-07-15 12:25:03 -04:00
5e1c722b10 Merge branch 'develop' into collected-small-changes 2023-07-14 20:09:27 -04:00
e6873bb7c8 modernize code 2023-07-14 20:08:34 -04:00
78d3d4948f fix off-by-one bug in argument parsing 2023-07-14 20:08:21 -04:00
2090d33d5f Merge pull request #3848 from ndtrung81/amoeba-gpu-bugfix
Bugfix for AMOEBA/HIPPO GPU
2023-07-14 18:32:58 -04:00
be2e437cec use approximation for erfc() on OpenCL for Intel since the OpenCL version seems broken 2023-07-14 10:08:59 -04:00
620c60122a should not use pow() for computing cube, use multiplication. 2023-07-14 10:08:09 -04:00
02d189fb23 avoid false positive with static code analysis 2023-07-13 10:53:56 -04:00
e2d7c54409 Merge pull request #3851 from hammondkd/doc-fixes
Documentation: swap "parsed-literal::" for "code-block:: LAMMPS" in Syntax sections
2023-07-12 23:26:17 -04:00
acb0b89833 fix typos 2023-07-12 20:48:36 -04:00
6907543e9d highlight if/then/elif/else everywhere, but revert for general keywords 2023-07-12 20:25:49 -04:00
df2cfe28c4 Merge pull request #3850 from jibril-b-coulibaly/BPM
BPM package: allow bonded atoms to be excluded from neighbor lists if BPM cannot break + doc update
2023-07-12 18:38:08 -04:00
24de6377d3 handle more commands with arguments for more consistent syntax highlighting 2023-07-12 14:43:04 -04:00
fe95dbc82f enforce all special_bonds weights to be 1.0 when overlay/pair is used 2023-07-12 11:37:17 -06:00
751dc1cfb6 improve pygments lexer to detect more text to highlight and for more consistency 2023-07-12 12:28:03 -04:00
3b859094bf there is no mandatory group-ID for both commands 2023-07-12 12:27:15 -04:00
7d88a351f5 Merge branch 'develop' into doc-fixes 2023-07-12 11:41:15 -04:00
6e65744d1a Merge pull request #3844 from akohlmey/collected-small-fixes
Collected small fixes
2023-07-12 11:40:02 -04:00
eb52112a57 Merge branch 'develop' into collected-small-fixes 2023-07-11 23:07:52 -04:00
9e049147be remove accidental commit 2023-07-11 19:50:37 -04:00
fe2a275531 update list of known commands 2023-07-11 19:40:14 -04:00
6efa8526ba work around pygments issue 2023-07-11 19:39:54 -04:00
6123883324 Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax" 2023-07-11 17:57:22 -05:00
4bfffce703 merge conflict 2023-07-11 17:15:27 -05:00
0f89a8b2ca explicit special_bonds commands for 1-2 coul weight equal to zero 2023-07-11 10:42:26 -06:00
564a8e88c1 use blanks on both sides of comparison operators not only one, remove blanks next to parenthesis 2023-07-11 10:31:16 -04:00
3328389baf Merge pull request #3814 from rohskopf/jax
JAX ML-IAP Unified connection & examples
2023-07-11 07:15:18 -04:00
4d8ef552c4 remove dead code, trim namespace imports 2023-07-10 22:42:49 -04:00
c63c9711d5 update remaining ellipsoid example dump output for OVITO compatibility 2023-07-10 19:42:48 -04:00
a4b3306b7c fix error message 2023-07-10 18:48:13 -04:00
cb27cb644f Merge remote-tracking branch 'github/develop' into collected-small-fixes 2023-07-10 13:11:24 -04:00
254afdd938 Merge pull request #3849 from jibril-b-coulibaly/doclink
fix typo for broken links in doc
2023-07-10 13:10:38 -04:00
469ffc7aba Merge pull request #3845 from ndtrung81/dielectric-updates2
Update and bugfix for the DIELECTRIC package
2023-07-10 11:50:23 -04:00
55343d715c update URL 2023-07-09 21:39:51 -04:00
2607212363 update for upstream changes 2023-07-09 21:21:39 -04:00
63c28337ab Merge branch 'develop' into collected-small-fixes 2023-07-09 21:20:07 -04:00
91b16c5945 make certain conductivity class member is always initialized 2023-07-09 21:10:44 -04:00
60b45f9766 correct error message 2023-07-09 18:01:19 -06:00
0718114a67 fix typo for broken links in doc 2023-07-09 17:43:39 -06:00
75a2557e82 fix bugs where an Atom::tag value was stored in an int and not a tagint 2023-07-09 15:41:39 -04:00
d6412dc97b Attempted to resolve issues with switching from acctyp4 to acctyp3 in tep, fieldp since the changes in PR #3675, noting some changes with Intel OCL PR #3663 2023-07-08 00:50:19 -05:00
651ed1960d add per-atom data bugfix from Stan for fix ave/histo and fix ave/histo/weight 2023-07-07 18:29:28 -04:00
6a8ca34ce8 Merge pull request #3843 from dsbolin/gran_heat
Minor bug fix and enhancements for granular heat transfer
2023-07-06 21:09:23 -04:00
a3b9914f62 make error messages consistent with keyword values yes/no. Allow coul weight for 1-2 bonds to be zero for break no to eliminate bonded atoms from neighbor list when bonds cannot break 2023-07-06 17:48:49 -06:00