Commit Graph

440 Commits

Author SHA1 Message Date
fc67df3b5f fix memory management bug 2022-09-03 10:38:31 -04:00
9b41d28947 Merge branch 'develop' into type-labels
# Conflicts:
#	doc/src/dihedral_coeff.rst
2022-09-01 21:09:04 -04:00
2c0eb10d62 label electron spin with "espin" instead of "spin" but be backward compatible 2022-08-30 06:20:53 -04:00
b6ce6755d9 add Atom::get_style() method 2022-08-27 16:13:00 -04:00
4b842d52e6 Merge branch 'develop' into type-labels 2022-08-22 10:45:48 -04:00
92c9614429 Merge branch 'develop' into refactor-find-xxx
# Conflicts:
#	src/atom.h
#	src/compute_centroid_stress_atom.cpp
2022-08-17 15:48:26 -04:00
3c744772b8 add new api to access molecules. 2022-08-13 16:02:50 -04:00
2eb6ff1111 allow const char * argument 2022-08-11 03:45:56 -04:00
eb4ce25f03 finish rolling back multiple maps feature 2022-08-09 11:32:29 -04:00
363b80f85c begin unfeaturing multiple label maps feature 2022-08-09 01:01:31 -04:00
8ac7aac620 fix merge commit 2022-08-08 17:40:28 -04:00
f9717049b1 Merge branch 'develop' into type-labels 2022-08-08 17:16:50 -04:00
e4c798674f Merge branch 'develop' into amoeba-ak 2022-07-02 22:02:07 -04:00
2d366ce220 add per-atom sp to extract() 2022-07-01 14:08:46 -06:00
a14f0cfd6c Merge branch 'amoeba' into amoeba-gpu, update the gpu pair styles with the base class 2022-06-28 12:54:27 -05:00
c6d59fc526 adding documentation and integration fix 2022-06-12 10:09:26 -06:00
97fab45f7e Merge branch 'develop' into amoeba-ak 2022-05-28 05:24:02 -04:00
71185b9f98 fix error message 2022-05-06 01:02:40 -04:00
929734ce45 Merge remote-tracking branch 'github/develop' into amoeba-ak
# Conflicts:
#	doc/src/Commands_pair.rst
#	src/memory.h
2022-04-28 20:08:18 -04:00
cf647347c9 Merge branch 'develop' into safer-data-file-parsing
# Conflicts:
#	src/atom.cpp
2022-04-22 22:25:41 -04:00
531e553162 Merge branch 'amoeba' into amoeba-gpu 2022-04-22 16:10:24 -05:00
3b1021abd1 cosmetic changes. improve programming style conformance 2022-04-22 08:36:20 -04:00
55a7c341af improve data file section parsing
- avoid segfaults when dereferencing a null pointer on short files
- allow skipping over empty and comment-only lines.
2022-04-22 08:35:09 -04:00
6d56629660 improve error messages 2022-04-22 08:31:53 -04:00
89195363d6 whitespace 2022-04-18 21:20:13 -04:00
f8f2b9542e sync with current develop 2022-04-18 17:29:23 -06:00
111111b38b Merge branch 'develop' into atomvec-strings 2022-04-14 16:52:04 -04:00
ac8d97d358 capture by reference 2022-04-14 12:27:45 -04:00
31178661c9 switch to C++11 compatible lambda function capture 2022-04-14 12:27:03 -04:00
500a3426ed "stringify" and "vectorize" per-atom data handling in Atom class 2022-04-14 11:31:20 -04:00
c9ab5ebbf5 cosmetic 2022-04-13 12:59:54 -04:00
0f1097d7e6 recover read_restart and read_data capability for fix property/atom 2022-04-13 12:41:40 -04:00
ef4e41d2a2 programming style and format updates 2022-04-12 22:52:07 -04:00
f64d405ad8 Fixing remaining errors/warnings in doc build 2022-04-12 15:59:38 -06:00
36723853c9 Merge branch 'develop' into BPM 2022-04-11 12:18:34 -04:00
200b4f13c7 use dynamic cast instead of c-style cast when casting from base type to derived class 2022-04-10 18:18:06 -04:00
92a968a8a9 Resolving merge conflicts 2022-03-23 14:28:27 -06:00
e13a70ad2f Merge branch 'develop' into type-labels 2022-03-23 01:08:35 -04:00
f1d695299e simplify checking for intel neighbor list requests 2022-03-05 20:31:56 -05:00
642b1e25f6 Updating to develop 2022-02-18 13:58:38 -07:00
b42aebc197 silence compiler warnings 2022-02-13 18:19:50 -05:00
6a0e93a18a convert more style_creators to use local static functions 2022-02-11 18:29:52 -05:00
0bf941219f silence compiler warnings 2022-01-27 17:21:50 -05:00
19abc5d329 Merge branch 'develop' into BPM 2022-01-12 10:52:11 -07:00
ede7787741 Refactor Atom::data_bodies() 2022-01-04 11:56:56 -05:00
f557bf6e20 implement suggestion by @rbberger 2022-01-04 11:37:32 -05:00
c17a183816 do error checking already in read_data code 2021-12-31 14:34:09 -05:00
6d9764e140 add missing advance of buffer pointer 2021-12-31 00:14:52 -05:00
e6e9aed385 modernize/correct parsing for Bonus and Bodies sections 2021-12-30 22:58:14 -05:00
8d53cd1e5d modernize parsing of Velocities section of data files 2021-12-30 19:14:09 -05:00