Commit Graph

223 Commits

Author SHA1 Message Date
9921338ee1 update log files for MGPT package 2024-02-07 03:57:12 -05:00
14abc184f8 Merge pull request #4040 from alphataubio/cgdna
[CG-DNA examples/util] fixed indentations and ported python 2 code to python 3
2024-01-18 14:55:41 -05:00
a3682e1bd5 retain compatibility with python 2.x 2024-01-13 04:56:16 -05:00
5b05112aab fixed indentations and ported python 2 code to python 3 2024-01-12 18:19:50 -05:00
c60217123a Merge branch 'lammps:develop' into bond_react_fixes_aug23 2024-01-10 18:45:29 -05:00
13b6d40062 tiny_epoxy example correction
not sure why this issue showed up in recent LAMMPS versions
2024-01-03 20:38:10 -05:00
d9ea10ca24 Merge branch 'lammps:develop' into bond_react_fixes_aug23 2024-01-03 14:59:26 -05:00
4ea40ed2fd Merge branch 'ilp-tmd-update' of github.com:oywg11/lammps into collected-small-fixes 2023-12-22 14:45:43 -05:00
aa221e2f2b add new potential file for aip/water/2dm 2023-12-21 10:28:53 +08:00
e98df7018b update the example files 2023-12-19 08:17:43 +08:00
e6a510ddc5 Merge branch 'lammps:develop' into bond_react_fixes_aug23 2023-12-17 17:02:18 -05:00
89c5ee7079 Merge pull request #3996 from lafourcadep/snann_slcsa
Compute sna/atom on fixed number of neighbors and compute slcsa/atom (Supervised Learning Crystal Structure Analysis tool)
2023-12-13 14:36:49 -05:00
0c4a1cb21d Merge pull request #4009 from ndtrung81/gpu-updates-Dec23
GPU package updates Dec 2023
2023-12-13 11:59:10 -05:00
754041ee36 minor fix 2023-12-13 11:57:03 -05:00
29cf012061 re-use existing potential file, fix screen/log output, plug memory leaks 2023-12-12 23:28:09 -05:00
e7c330db9d Merge branch 'develop' into snann_slcsa 2023-12-12 22:30:20 -05:00
26d0671337 update compute slcsa example to better align with LAMMPS conventions and move to more appropriate folder 2023-12-12 22:30:15 -05:00
e53b3c76f5 Updated doc pages for the added pair styles, added a cmake preset for gpu-cuda, added "comm_modify vel yes" to in.mdpd 2023-12-05 15:32:57 -06:00
e5ae46a01a update compute pace example to follow usual conventions 2023-12-05 06:15:40 -05:00
7d8de8301f Merge branch 'develop' into compute-pace-update 2023-12-05 06:05:34 -05:00
4035291a48 Merge branch 'develop' into collected-small-changes 2023-12-02 08:17:11 -05:00
ef2a420aeb modernize 2023-12-01 17:16:25 -05:00
00be75e084 update example inputs and logs for change in ReaxFF required name 2023-11-30 10:31:08 -05:00
7f2a6b1a85 update h2 fix pimd/langevin example 2023-11-16 12:00:29 -05:00
db4f55b76f compatibility with new lammps-user-pace library and cleanup 2023-09-19 17:24:15 -06:00
999c364b83 better way to list rxn counts 2023-08-25 21:44:42 -04:00
476446d93c add reference log outputs for ML-HDNNP and add input demoing use with hybrid 2023-08-23 08:58:20 -04:00
2305c4cb30 Merge branch 'develop' into cmake-3.16 2023-08-03 17:39:15 -04:00
378ef4b23e require CMake version 3.16 2023-06-30 22:59:41 -04:00
c1213c5222 use dynamic/dof and extra/dof consistently. remove compatibility note in docs. 2023-06-30 16:27:07 -04:00
4faebaf4ed add log files for fix pimd/langevin 2023-06-14 14:53:06 -04:00
b7afe412dc Updating SDPD examples 2023-06-07 13:08:46 -06:00
73693ca25b Merge pull request #3787 from oywg11/ilp-water-graphene
Registry-Dependent Potential for Interfaces of Water with Graphene
2023-06-07 11:48:43 -04:00
bf8a4402ce update log files in the examples 2023-06-04 10:17:21 +08:00
63f3d183fe rename log files of examples 2023-06-03 23:02:45 +08:00
f507e30d36 update input files of examples 2023-06-03 22:52:45 +08:00
bbff6c25b3 add examples 2023-05-18 22:01:19 +08:00
39f61b6af3 Merge branch 'develop' into pimd_langevin 2023-05-17 17:30:49 -04:00
7c723b4852 add support for a region keyword to fix edpd/source and fix tdpd/source 2023-04-21 17:58:28 -04:00
561f80ccc7 add example for fix pimd/langevin with reduced units 2023-03-27 22:21:38 -04:00
ed8b06a756 Merge pull request #3628 from lammps/fix-mdi-qmmm
Add a fix mdi/qmmm command for running QMMM via MDI code coupling
2023-03-23 12:33:00 -04:00
f94bea8d97 correct fix pimd/langevin example file permission 2023-03-21 09:22:37 -04:00
7a38f49a21 add lj example for fix pimd/langevin 2023-03-20 14:10:09 -04:00
c472821d67 remove outdated MDI example folder 2023-03-14 23:31:16 -04:00
2d8936068e Merge pull request #3679 from ndtrung81/dielectric-bugfixes
Dielectric package doc update and bugfix
2023-03-13 18:27:50 -04:00
6cb45a5e0f update minimal MDI test/demo for current code 2023-03-12 17:08:17 -04:00
c2d0734bc4 rerun updated examples and record log files 2023-03-07 14:36:56 -05:00
a3c9029664 Reverted the cutoff to 20.0 for in.nopbc 2023-03-07 12:02:56 -06:00
b65623ef1f Added back comments to data.sphere 2023-03-07 11:57:49 -06:00
9e57bedea2 Fixed bugs when mistakenly replacing all "NULL" with "nullptr" with FixPolarizeFunctional, reduced the number of induced charges so that in.nopbc with dof finishes in a reasonable time 2023-03-07 11:51:14 -06:00