Commit Graph

84 Commits

Author SHA1 Message Date
9550535392 Merge remote branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
	lib/cuda/Makefile.lammps
	src/GPU/fix_gpu.cpp
2013-07-27 12:34:08 +02:00
b12b9fced9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10409 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-07-26 15:38:06 +00:00
2e722ce5df improvements to serialization/deserialization feature 2013-05-24 15:14:38 +02:00
8a912603a5 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
Resolved Conflicts:
	doc/Manual.txt
2013-03-12 18:44:52 +01:00
a920f23204 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9632 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-03-11 20:47:14 +00:00
e1709a4489 Merge branch 'master' into lammps-icms
Resolved Conflicts:
	src/USER-OMP/msm_omp.cpp
	src/USER-OMP/msm_omp.h
	src/USER-OMP/pair_born_coul_msm_omp.cpp
	src/USER-OMP/pair_born_coul_msm_omp.h
	src/USER-OMP/pair_buck_coul_msm_omp.cpp
	src/USER-OMP/pair_buck_coul_msm_omp.h
	src/USER-OMP/pair_coul_msm_omp.cpp
	src/USER-OMP/pair_coul_msm_omp.h
	src/USER-OMP/pair_lj_charmm_coul_msm_omp.cpp
	src/USER-OMP/pair_lj_charmm_coul_msm_omp.h
	src/USER-OMP/pair_lj_cut_coul_msm_omp.cpp
	src/USER-OMP/pair_lj_cut_coul_msm_omp.h
2013-01-18 07:50:51 -05:00
87f2415519 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9278 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-01-17 15:52:46 +00:00
f51ad982f6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9277 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-01-17 15:51:57 +00:00
427161ef56 Merge branch 'master' into lammps-icms
Resolved Conflicts:
	src/MAKE/Makefile.openmpi
	src/min_linesearch.cpp
2013-01-09 07:09:35 -05:00
772e83406d git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9204 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-01-03 16:22:36 +00:00
a69bbed0b7 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9184 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2013-01-02 16:48:13 +00:00
399871b63a Merge branch 'master' into lammps-icms 2012-10-27 15:30:19 -04:00
fbc3f58a05 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9027 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-10-26 23:31:09 +00:00
95f350087c Merge branch 'master' into lammps-icms
Resolved Conflicts:
	doc/Section_packages.html
	doc/Section_packages.txt
	doc/dump_modify.txt
	doc/fix_colvars.html
	doc/fix_colvars.txt
	src/Make.sh
	src/Makefile
	src/USER-COLVARS/colvarproxy_lammps.cpp
	src/dump_xyz.cpp
2012-05-24 09:03:58 -04:00
44904c5bf3 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8163 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-05-23 16:20:25 +00:00
e0d696f14d update colvars test examples 2012-05-22 20:00:13 -04:00
9976610faa expand test 2012-04-23 13:54:40 -04:00
8a744d26dc update examples. no need for "auto" in fix spring. 2012-03-17 13:08:28 -04:00
f727b47017 update simple colvars example and compare to spring 2012-03-16 22:23:20 -04:00
0e33af4f94 delete test input 2012-03-12 23:19:41 -04:00
6456a5cb2d colvars now working correctly in parallel
atom->map() didn't quite behave as expected.
need to restrict the result to local atoms.
2012-03-12 22:52:59 -04:00
82a43ae078 first fully working version of the colvars module 2012-03-07 21:06:27 -05:00
3a98d5829e added colvars test example 2012-03-05 21:52:52 -05:00
4f1bc1a2da documentation updates 2012-01-07 12:01:15 -05:00
0af770b923 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7432 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2012-01-06 17:34:26 +00:00
479db22978 update and remove crud. 2012-01-05 14:41:52 -05:00
9259ae8699 Merge branch 'master' into lammps-icms
Resolved Conflicts:
	doc/Eqs/pair_coul_diel.jpg
	doc/Section_commands.html
	doc/Section_commands.txt
	doc/pair_coul_diel.html
	doc/pair_coul_diel.txt
	doc/processors.html
	doc/processors.txt
	examples/USER/imd/bucky_cnt_imd.vmd
	examples/USER/imd/in.bucky-plus-cnt
	examples/USER/imd/in.deca-ala-solv_imd
	examples/USER/imd/in.deca-ala_imd
	lib/gpu/Makefile.fermi
	lib/gpu/Makefile.lincoln
	lib/gpu/Makefile.longhorn
	lib/gpu/Makefile.serial
	lib/gpu/geryon/VERSION.txt
	lib/gpu/pair_gpu_device.cpp
	src/ASPHERE/atom_vec_ellipsoid.cpp
	src/CLASS2/Install.sh
	src/COLLOID/atom_vec_colloid.cpp
	src/DIPOLE/atom_vec_dipole.cpp
	src/GPU/fix_gpu.cpp
	src/GRANULAR/atom_vec_granular.cpp
	src/GRANULAR/fix_pour.h
	src/KSPACE/Install.sh
	src/KSPACE/fft3d.cpp
	src/KSPACE/fft3d.h
	src/KSPACE/kissfft.h
	src/KSPACE/pppm.cpp
	src/KSPACE/pppm.h
	src/KSPACE/pppm_tip4p.cpp
	src/MAKE/Makefile.openmpi
	src/MAKE/Makefile.serial
	src/MANYBODY/pair_airebo.cpp
	src/MANYBODY/pair_comb.cpp
	src/MANYBODY/pair_eam.cpp
	src/MANYBODY/pair_eim.cpp
	src/MANYBODY/pair_sw.cpp
	src/MANYBODY/pair_tersoff.cpp
	src/MANYBODY/pair_tersoff_zbl.cpp
	src/MOLECULE/atom_vec_angle.cpp
	src/MOLECULE/atom_vec_bond.cpp
	src/MOLECULE/atom_vec_full.cpp
	src/MOLECULE/atom_vec_molecular.cpp
	src/Makefile
	src/Makefile.lib
	src/PERI/atom_vec_peri.cpp
	src/USER-CG-CMM/Install.sh
	src/USER-IMD/README
	src/USER-IMD/fix_imd.cpp
	src/USER-IMD/fix_imd.h
	src/USER-SMD/Install.sh
	src/atom_vec_atomic.cpp
	src/atom_vec_charge.cpp
	src/comm.cpp
	src/finish.cpp
	src/fix_box_relax.cpp
	src/fix_deposit.cpp
	src/fix_spring_self.cpp
	src/fix_store_state.cpp
	src/fix_wall.cpp
	src/fix_wall_reflect.cpp
	src/input.cpp
	src/input.h
	src/memory.cpp
	src/memory.h
	src/pair_lj_cut.cpp
	tools/restart2data.cpp
2011-12-31 19:07:46 -05:00
70a85bddfd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7256 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-12-01 14:58:11 +00:00
91f4940250 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6836 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-08-27 20:08:16 +00:00
a2ea5509ff git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6616 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-08-08 19:01:31 +00:00
c7e91e5418 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6379 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-06-13 22:31:50 +00:00
63953173fd git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6272 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-06-01 00:01:29 +00:00
eac710420d Merge branch 'master' into lammps-icms 2011-02-23 10:58:07 -05:00
1d4a6440d1 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5715 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-02-22 22:35:22 +00:00
f50885fd46 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5714 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2011-02-22 22:34:43 +00:00
ef3307c369 Merge branch 'master' into lammps-icms 2010-09-02 09:36:21 -04:00
6ce7d46695 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4648 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2010-09-01 18:55:48 +00:00
7d832b4db1 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4647 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2010-09-01 18:54:39 +00:00
9f3153d089 add SWCNT plus buckyball demo for fix imd. 2010-08-31 21:36:56 -04:00
de6f8589f4 update imd examples for new coordinate filtering 2010-08-31 21:33:22 -04:00
ae926d0ade Merge branch 'master' into lammps-icms 2010-08-21 15:13:01 -04:00
7c200a5fde git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4550 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2010-08-20 20:48:36 +00:00
a5e119a167 fix final glitch in tip4p specific ev_tally call 2010-07-22 10:28:05 -04:00
d3e8436b54 add test input for tip4p water. 2010-07-22 10:12:38 -04:00
dfb10b9311 adapt pair style soft/omp to mainline changes.
the growth of potential the potential prefactor
is now handled by fix adapt. adjust example inputs
and reference log files to this change.
2010-06-20 17:52:37 -04:00
805af30844 add example/test input for granular pair styles. 2010-06-06 16:45:10 -04:00
a4171a07fe added example input for colloid pair style.
OpenMP seems to be broken
2010-06-05 21:53:57 -04:00
f0bb0f783d demo/test examples for OpenMP variants of asphere 2010-06-05 19:32:29 -04:00
c35ea32df3 add a bunch more examples for tests and benchmarks. 2010-06-05 18:48:21 -04:00
2d69156a85 adjust inputs for new fix wall/reflect syntax 2010-06-04 10:52:16 -04:00