Commit Graph

956 Commits

Author SHA1 Message Date
cf359dede2 Merge pull request #2139 from akohlmey/fetch-potentials
Add feature to transparently download external potential files when packages are enabled
2020-06-12 06:28:42 -04:00
77a38c2a0a remove (unsupported) reference to AMD Ryzen 2020-06-11 17:03:20 -04:00
64a4e5e21a make kokkos configuration keywords in traditional build case insensitive 2020-06-10 15:53:09 -04:00
6891fa2610 update a few URLs to use https: instead of http: 2020-06-10 12:34:09 -04:00
9bf47cd9f3 make KOKKOS library compilation compatible with mode=shared 2020-06-05 13:58:11 -04:00
3b77546eb9 Merge pull request #2069 from junghans/latte_v1.2.2
latte: bump to v1.2.2
2020-05-07 14:27:19 -04:00
69a6a8e064 pull in kokkos-3.1.01 2020-05-07 10:22:42 -06:00
fe62e1dbc9 latte: bump to v1.2.2 2020-05-05 10:51:11 -06:00
fdb4ba51da add patch to VORONOI package external build so it will compile with BSD make 2020-05-03 04:04:02 -04:00
e8d4cc424e use different header for alloca(3) on *BSD 2020-05-03 01:10:04 -04:00
74e8505a1f Merge branch 'master' into collected-small-changes 2020-04-27 16:57:47 -04:00
121b40ebaa Merge pull request #2026 from ndtrung81/ellipsoid-gpu-special-bonds
Fixed bugs with special bonds for ellipsoid gpu pair styles
2020-04-27 16:15:58 -04:00
0a9bed0ca6 Merge branch 'cmake_clean_up_plumed' of github.com:junghans/lammps into collected-small-changes 2020-04-27 16:07:52 -04:00
437967bfd8 adding the standard header to prevent ‘NULL’ was not declared error 2020-04-27 12:49:03 -05:00
f1aaad2b13 remove trailing whitespace 2020-04-27 09:54:05 -04:00
d53e468ce0 do not mix c++ style and c-style comments 2020-04-26 22:50:24 -04:00
0b6e5be379 cosmetic edit to trigger new CI test runs 2020-04-26 00:25:07 -04:00
7fd50045fe USER-PLUMED: remove unused defines 2020-04-25 10:16:58 -06:00
1295a9ef46 Fixed bugs with special bonds for ellipsoid gpu pair styles 2020-04-25 10:28:18 -05:00
ba8d043c7e Update Kokkos library in LAMMPS to v3.1 2020-04-16 09:06:08 -06:00
be1f307384 Add defines to build Lepton with MSVC and traditional make 2020-04-14 16:57:04 -04:00
209a3fde71 use MY_PI everywhere, not M_PI. 2020-04-13 12:02:53 -04:00
5d2ec73c5d re-enable cross-compilation with mingw64 2020-04-13 11:22:19 -04:00
0608002451 Remove trailing whitespace 2020-04-10 15:10:41 -04:00
438ee4d75b Merge remote-tracking branch 'origin/master' into gpu_hip 2020-04-08 13:49:41 -04:00
72200a9958 Fix MPI environment variable issue in Makefile.kokkos 2020-04-01 08:57:18 -06:00
19a52dc506 Update lib/gpu/.gitignore 2020-03-30 17:36:22 -04:00
373b57cfdc Change 'echo -e' to 'printf' for greater compatibility 2020-03-30 17:36:00 -04:00
4f6dd381c3 Merge branch 'master' into gpu_hip 2020-03-30 17:15:55 -04:00
50935b5cbc Fix typos 2020-03-25 14:23:45 -06:00
60864e38d1 Update Kokkos library in LAMMPS to v3.0 2020-03-25 14:08:39 -06:00
7f53cbc1a0 fix grammar issue 2020-03-17 20:33:37 -04:00
e000c46c8c correct spelling 2020-03-17 20:29:18 -04:00
649a8cc01a Fix typo 2020-03-14 13:57:48 +09:00
8af9d40392 Update DOI resolver
https://www.doi.org/doi_handbook/2_Numbering.html#htmlencoding
2020-03-12 16:53:24 +09:00
1fb54c307c Merge pull request #1918 from akohlmey/collected-small-fixes
Collected small fixes for the next patch
2020-03-05 15:16:50 -05:00
5a3a5d86d4 reduce compiler warnings and avoid clash with KOKKOS 2020-03-05 14:27:33 -05:00
fb3a8f5bb1 Merge pull request #1909 from giacomofiorin/colvars-update
Update Colvars to version 2020-02-27
2020-03-05 10:18:01 -05:00
8765b14377 add EPYC to KOKKOS_ARCH_LIST 2020-03-01 13:45:06 +08:00
7be004512f Update Colvars to version 2020-02-27
This update contains several small new features or usability improvements.
    Descriptions and authorship information can be accessed from the pull
    requests listed below.

    Allow setting sigma parameter directly for metadynamics
    https://github.com/Colvars/colvars/pull/325

    Remove default values for lowerWall and upperWall legacy keywords
    https://github.com/Colvars/colvars/pull/324

    biasActualColvar option to bypass extended-Lagragian for a bias
    https://github.com/Colvars/colvars/pull/321

    Flexible restart-reading
    https://github.com/Colvars/colvars/pull/320
2020-02-27 19:55:31 -05:00
0db0d5408a update instructions for in qmmm README to cover both build systems and include more details 2020-02-20 16:59:06 +01:00
8a52e5dbe7 fix logic error in generic Install.py script when a Makefile.lammps is missing 2020-02-19 18:10:32 +01:00
cc3a7c37cb more lib compilation updates 2020-02-18 11:16:08 +01:00
36458a95b7 Updated 2020-02-18 10:59:51 +01:00
387a283157 more lib compilation updates 2020-02-18 10:55:13 +01:00
82b57bd3b8 Upfated Makefile.foo inside lib/qmmm 2020-02-18 10:47:04 +01:00
4cacc4701d update plumed support to include version 2.6.0. Fix bug in API check 2020-02-13 16:03:58 +01:00
d024b3d340 Add shared memory optimization 2020-02-12 01:35:44 +03:00
33fc22b752 Fix echo in Makefile 2020-02-03 01:55:20 +03:00
9e8806bd22 Addition to lib/gpu/README for HIP 2020-01-31 21:26:52 +03:00