Commit Graph

694 Commits

Author SHA1 Message Date
8679266db8 add container definitions for Fedora 36 and Ubuntu 22.04LTS 2022-04-25 13:05:43 -04:00
4d1bdb4741 add python tool to detect and remove (if desired) error docs from headers
also document the tools in the manual.
2022-04-23 13:52:12 -04:00
b7a3af7bd1 update plumed version in containers and install python3-venv 2022-04-21 12:01:49 -04:00
74f2b67b1a no if statement required before delete[] 2022-04-10 19:55:24 -04:00
39b316729b use auto type when assigning from cast or using new 2022-04-10 18:16:36 -04:00
c54fe7d97d small update 2022-04-10 08:00:47 -04:00
fb8074d294 renormalize line endings. add .gitattributes to configure them explicitly 2022-03-17 18:21:31 -04:00
4be3da727a include tools/python in whitespace check 2022-03-16 13:22:39 -04:00
bb4268518b make python 2 compatible 2022-03-16 12:56:19 -04:00
72425f1874 add '#' to make the list of headers a comment 2022-03-16 12:55:53 -04:00
b774464156 whitespace 2022-03-16 12:55:25 -04:00
0fd02ffd10 Merge pull request #3153 from aliehlen/log-pizza-updates
Log pizza updates
2022-03-16 11:50:31 -04:00
ali
7343f6e5b8 writing column names is optional 2022-03-10 15:23:21 -06:00
3e01fa49dd emulate using '-i' command line flag 2022-02-25 18:34:45 -05:00
257805d325 make prompt name consistent 2022-02-25 09:32:41 -05:00
59e2b819e0 need python3-venv package for updated make install-python 2022-02-25 08:44:15 -05:00
2d7375798f more python 3 compatibility 2022-02-23 13:27:33 -05:00
5594868ef2 retain compatibility with python2 2022-02-23 10:18:02 -05:00
ali
035a16d6d8 remove interactive mode for log plotting
this doesn't work in linux
2022-02-22 10:51:58 -06:00
ali
7d8f7855d5 add writing column names in logfile 2022-02-22 10:51:58 -06:00
ali
5c297fa4d1 update log pizza.py files to python 3 2022-02-22 10:51:58 -06:00
e3222a4bd0 Merge pull request #3126 from Bibobu/EAM_alloy_python_script
Added Python version of Zhou04_create_v2.f in eam_database
2022-02-14 19:48:51 -05:00
9a200c9b79 small tweaks 2022-02-14 18:07:29 -05:00
c46dd3675a add Cr parameters to python database file 2022-02-14 18:06:48 -05:00
b0c0251154 delete unwanted files 2022-02-14 18:06:24 -05:00
c65dbd338b change create_eam.py so it can be called as a function from another script 2022-02-14 17:44:33 -05:00
8431d72d75 Added a test directory to tools/eam_database 2022-02-14 21:29:51 +01:00
3bc91386a0 apply include statement updates suggested by running IWYU 2022-02-13 19:39:15 -05:00
4343e8194c update README file 2022-02-12 10:20:49 -05:00
096ea21dd9 correct potential file output header (must have 3 comment lines) 2022-02-12 10:14:09 -05:00
8808b11d26 must write out 3 lines of comment in fortran code. sync output style with python 2022-02-12 10:04:24 -05:00
2fdadcfeb6 include UNITS: metadata tag 2022-02-12 10:01:20 -05:00
0113346e54 apply some pylint recommendations 2022-02-12 10:01:01 -05:00
3cca41b72e print help without arguments. clarify help message and argument names text 2022-02-12 09:38:05 -05:00
69d3b1ebf3 output files are now named .eam.alloy 2022-02-12 09:37:23 -05:00
0f5fbf1c42 update citation info format 2022-02-12 09:36:53 -05:00
06d4bb3faf set date dynamically 2022-02-12 09:33:37 -05:00
e9b11e3673 Added Python version of Zhou04_create_v2.f: create_eam.py and eamDatabase.py in tools/eam_database 2022-02-12 12:42:54 +01:00
60d03f34cc update create.f with changes from NIST database
also add parameters for Cr and document in README file and change
the code to create output files with .eam.alloy extension
2022-02-10 14:41:25 -05:00
ea0f31c997 Update SWIG library interface 2022-02-04 17:43:17 -05:00
c9de8fca1d silence compiler warnings 2022-01-29 17:07:00 -05:00
698256f4fe update fedora singularity image to Fedora 35 2022-01-12 08:17:54 -05:00
c03cdfdf60 Add libyaml-cpp dev package 2021-12-01 14:00:08 -05:00
195455faa8 Update GPU and NVIDIA container definitions 2021-12-01 13:48:54 -05:00
e75312ddf6 Update ROCm containers to v4.5.0 2021-12-01 13:24:07 -05:00
ff919af3ef Update container bundled PLUMED to v2.7.3 2021-12-01 11:39:05 -05:00
e0770a2ac0 Add Ubuntu 20.04 OneAPI container definition 2021-12-01 10:41:01 -05:00
229ce0a61b Merge pull request #3027 from yihengwuKP/fix-reorder-remd
Fix the indent and ot bugs in reorder_remd_traj.py
2021-11-17 14:11:12 -05:00
1c1cd60baf Fix the indent and ot bugs in reorder_remd_traj.py 2021-11-15 18:21:17 -06:00
1a940e052e add support for and apply clang-format to lammps-shell code 2021-11-04 15:55:28 -04:00