Commit Graph

145 Commits

Author SHA1 Message Date
e4a3a518f7 more use of fmtlib and std::string 2020-06-25 22:50:38 -04:00
63eab6e6d8 Merge branch 'master' into patch-1 2020-06-24 10:09:05 -04:00
62ee8d41f3 get rid of local buffers and snprinf() 2020-06-04 16:41:24 -04:00
dd11fb3964 remove .c_str() and simplify output in several places 2020-06-03 16:37:30 -04:00
a6d2ae2ee0 implement restart_reset flag for fixes in restart_global list 2020-05-27 12:44:05 -05:00
88bf503451 Merge from master 2020-04-30 08:17:05 -06:00
ed9c8b4ea0 reset Modify::n_timeflag in post_run() so we won't skip computes defined between runs 2020-02-11 00:30:09 -05:00
23b7adc9b2 we must defer to Modify::addstep_compute_all() if Modify::addstep_compute() if n_timeflag has not been set 2020-02-11 00:06:41 -05:00
b3a7aa6541 correct whitespace issue 2020-01-22 17:48:50 -05:00
d8ef5f6991 added internal fix dummy command to enable more control of fix ordering 2019-11-05 12:57:34 -07:00
22288e06b7 Merge branch 'master' into fix-compiler-warnings 2019-10-25 14:07:50 -04:00
dcb1b6500b allow regexp matches for Modify::find_fix_by_style() and consolidate usage of searching for fixes 2019-10-18 06:59:27 -04:00
cad6293078 use new utils::sfread() utility function in several classes 2019-10-17 11:29:08 -04:00
6833d6def6 Merge branch 'master' into kim-simulator-models
# Resolved Conflicts:
#	src/KIM/kim_query.cpp
#	src/KIM/pair_kim.cpp
2019-07-29 20:43:10 -04:00
256531a29a put implementation header first for all remaining main folder source files 2019-07-03 19:34:13 -04:00
96744c4933 more include file cleanup 2019-06-30 15:53:17 -04:00
483353a017 Merge remote-tracking branch 'lammps/master' into kim-simulator-models 2019-06-24 15:35:06 -05:00
b53df3dd63 disable optimization on functions building factories for many entries
this will speed up compilation and also avoid spurious warnings with gcc 4.4 and later
2019-06-06 20:37:17 -04:00
ce46d52c8a add new 'kim_style' command as front end for KIM simulator (and regular) models 2019-05-24 10:23:26 -04:00
d640c712f8 apply new utility function to most places creating new styles 2019-04-07 21:18:20 -04:00
8a384df5c3 use utils::strmatch() instead of strncmp() 2019-03-27 06:19:42 -04:00
0e213b80e9 reorder operations in init() to fix a bug with compute chunk/atom deleting a fix 2018-10-25 08:23:10 -06:00
b481af51d6 add pair_style deprecated and some tweaks for fix style 2018-10-02 16:26:20 +02:00
ca04e8f31c use snprintf() in a bunch of cases to avoid overflowing fixed size buffers with unchecked strings 2018-09-06 02:57:53 -04:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
01051e4cb1 refactoring of neighbor history 2017-10-10 16:53:51 -06:00
e91e505fb3 remove dependence of dump modify 'at' and 'append' 2017-10-06 09:44:29 -06:00
7a90eef527 Merge pull request #668 from ovilab/modify_deallocation_fix
Fixed proper deletion of fixes if fix is NULL
2017-10-05 17:00:10 -06:00
8d384b9149 whitespace cleanup 2017-10-02 15:03:48 -04:00
23e283f135 Fixed proper deletion of fixes if fix is NULL 2017-09-27 16:20:07 +02:00
09ad293425 remove dead code 2017-07-05 15:04:35 -04:00
f670dba3d0 3rd variant of Fortran wrapper for DFTB+ calling LAMMPS 2017-07-03 14:24:16 -06:00
3a01836325 simplify code for rigid body overlap checks 2017-06-05 16:39:17 -04:00
90ca0852c7 use "body" list via Fix::extract() to correctly identify atoms in bodies 2017-06-05 15:48:23 -04:00
95d6f05a76 add 3 APIs to Modify for checking if atoms overlap with any rigid fixes 2017-06-05 12:41:37 -04:00
99a68e487f fix suffix style handling bug for adding fixes and computes 2017-05-25 02:01:04 -04:00
dcede304df changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
f6a819580c pair TIP4P bug fix for cutoffs >> box size 2017-01-06 09:57:27 -07:00
f509f133af patch 13Dec16: neighbor refactor, Stan pppm/disp bug fix, M Brown INTEL package updates 2016-12-13 17:14:28 -07:00
04f5eadcf1 added LAST option to dump_modify thresh, more restart info printed out to screen 2016-10-11 12:39:52 -06:00
b190abea39 sync with GH
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15561 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-09-08 20:20:32 +00:00
083ff54c0c small bug fixes
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15527 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-31 20:26:15 +00:00
89b839056c git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15335 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-16 22:14:24 +00:00
3f802d97c9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15286 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-07-12 22:35:56 +00:00
50ac419d3f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15159 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-08 23:15:55 +00:00
0288bdba40 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15147 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-07 18:03:42 +00:00
6334768dd1 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15057 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-13 15:46:48 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
cee848f948 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14164 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-22 22:06:49 +00:00
269bff4b14 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13344 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-03-31 18:47:58 +00:00