Commit Graph

118 Commits

Author SHA1 Message Date
e5af9db84c clean up includes in MC and MISC package 2019-07-07 11:49:13 -04:00
416911aa7e more rearranging of include file order to put implementation headers first 2019-07-03 21:57:39 -04:00
42c31227d9 continuing to clean up include file lists 2019-07-01 15:59:16 -04:00
f73c848ee4 detect and error out when timestep was reset when restarting fixes atom/swap, gcmc, or deposit 2019-05-31 00:31:36 -04:00
4243af30d7 properly store 64-bit integers for next_reneighbor into double type buffers for restarts of fixes
also store number of attemps and number of successes in restart and retrieve those from it
2019-05-31 00:23:12 -04:00
bb36e6e3c8 implement some examples for using the utils::strmatch() function and use it for inexact Force::pair_match() 2019-02-01 12:23:06 +01:00
9646d4614f plug small memory leak in fix gcmc 2018-11-28 18:45:32 -05:00
aa705f6122 Added tail correction to fix gcmc 2018-07-11 15:59:48 -04:00
477d9feb5c replace variable length arrays in fix gcmc with new/delete 2018-05-04 18:48:43 -04:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
e1a17d428f print the warning about using group all with fix gcmc only from MPI rank 0 2018-04-04 12:26:43 -04:00
d1356c1d76 Made ndof dynamic for temperature fixes and computes 2018-04-03 15:07:04 -06:00
d00908ea3e whitespace cleanup 2018-03-13 23:02:55 -04:00
d18ba3b188 Added error if gcmc is used with molecules on more than one processor 2018-03-02 11:23:34 -08:00
99d5957a01 make default argument of virtual function Neighbor::build() explicit 2018-02-22 08:42:36 -05:00
1d403b2aa3 Added warning to discourage use of group all and fixed some segfault cases 2018-02-05 13:29:14 -07:00
9bb7f1ddf6 Fixed recent segfault in fix gcmc and added mcmoves keyword 2018-01-17 13:45:15 -07:00
b5e9e90bb6 white space cleanup 2017-07-10 17:21:20 -04:00
92395e9bb4 disallow MC moves with fix rigid and fix shake active. update examples and add shake example 2017-07-10 17:19:37 -04:00
0be2cd3d43 fix bug reported on lammps-users, when not using the first molecule template 2017-05-30 23:58:56 -04:00
cff4e4a837 Merge pull request #468 from andeplane/gcmc_fix_nlocal
Using correct value for atom->nlocal in translate/rotate in fix_gcmc.cpp
2017-05-30 10:45:39 -06:00
914848433a Using correct value for atom->nlocal 2017-05-01 00:02:57 +02:00
67fced37c8 Setting molecule COM to 0 after moving atoms 2017-04-26 20:10:18 +02:00
2f32fb7f8b patch 13Apr17 2017-04-13 11:19:48 -06:00
49dd9449b8 fix gcmc updates from Aidan, trimming of output for replica commands 2017-04-11 08:35:09 -06:00
1d8f0c762d Merge branch 'master' into fixes-for-stable 2017-03-28 14:37:30 -04:00
111d350a22 fix gcmc units change for chemical potential 2017-03-28 12:34:46 -06:00
c041727e4f remove dead code and reduce trivial compiler warnings (clang++) 2017-03-27 14:28:50 -04:00
44841f6891 fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
dcede304df changes for next patch, 2d disc options for spheres, fix external upgrade, bug fixes for fix ave/chunk for density calcs, Aidan doc page citation deconvolution 2017-03-21 08:56:37 -06:00
1cd4c48ccc new SNAP potential for W 2017-02-21 15:49:21 -07:00
2c8a7a318a bug fix for fix GCMC w/ fix shake, enhance of fix wall/gran/region with restarting 2016-10-13 16:55:53 -06:00
958e3e6a80 sync with Git
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15520 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-08-29 23:49:20 +00:00
876b033ea8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-31 16:33:07 +00:00
71c36003b9 Added Axel's improvement
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15067 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-26 17:27:15 +00:00
97b8a30b72 Blocked fix rigid
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15064 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-05-24 23:31:31 +00:00
e18f5a903b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14835 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-15 16:25:31 +00:00
eb8fdc4ab6 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14831 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-04-15 16:08:22 +00:00
b2e792d6ac fixed problem with exclusion
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14693 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-29 22:10:07 +00:00
737c083a4f Enabled triclinic cells
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14678 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2016-02-25 23:12:38 +00:00
921bcfb12d Allowed non-full_energy with triclinic
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14359 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-12-11 23:15:38 +00:00
da1a3ac83a Fixed error in onemols initialization when gcmc uses non-first molecule template
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14250 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-11-11 23:39:25 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
9a878cdd67 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14128 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-21 18:29:37 +00:00
7b16c435b6 Made molecule ID for molecule group to minus 1
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14122 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-19 17:19:32 +00:00
ce62105570 Require type argument be zero when mol keyword used
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14120 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-15 21:02:03 +00:00
537e951c6d added tfac_insert keyword and changed molecule insertion velocities PRNG
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14110 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-10-13 15:54:51 +00:00
ed7559f329 Made insertion work correctly for triclinic
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14043 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-09-12 16:41:00 +00:00
54210d7a9b Fixed triclinic bug in gcmc and qtype bug atom/swap
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14037 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-09-11 21:47:25 +00:00
4b03a29c04 Fixed molecule mass when gcmc offset applied
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13849 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-10 02:57:32 +00:00