Commit Graph

798 Commits

Author SHA1 Message Date
8ee1fefe19 add pointer to README and Manual to help. 2019-01-31 18:46:43 -05:00
763dda64af update lib/gpu/README to current state 2019-01-31 18:45:17 -05:00
1465352454 some cleanups and small bugfixes to conform better with python conventions 2019-01-28 17:37:05 -05:00
0cae619320 increase portability by using python modules instead of subprocesses 2019-01-28 15:54:19 -05:00
b7ab017a76 improve portability by using shutil.copyfile, os.path.join, and make -C 2019-01-28 17:44:46 +01:00
4fcfa4987a fix typo 2019-01-28 14:56:47 +01:00
53f600ea35 use enable all available plumed modules when using download/compile mode 2019-01-26 09:55:48 -05:00
53673cd99c fix typo 2019-01-20 16:01:34 -05:00
683f8854c2 a few more Install.py script changes. untested. 2019-01-15 23:02:49 -05:00
f8a8704ef4 use os.path.join(), os.symlink(), shutile.copyfile() and tarfile module 2019-01-15 18:07:50 -05:00
1ae112e563 small tweaks and improved consistency for Install.py in lib/kim 2019-01-14 18:03:32 -05:00
cea0855fe4 small programming style cleanup 2019-01-14 17:47:58 -05:00
d01c28002f update plumed support to use newer version of the library 2019-01-14 17:47:36 -05:00
54679b69f4 add argparse support to Install.py for kim library 2019-01-14 17:40:18 -05:00
dc5385b290 add argparse support to Install.py in message lib 2019-01-14 17:13:46 -05:00
659bec582e update Install.py for LATTE to use the argparse module 2019-01-14 16:54:44 -05:00
2604b60eb8 properly apply version flag 2019-01-14 16:29:07 -05:00
718428df68 add md5 sum check for Voro++ download via Install.py 2019-01-14 15:03:29 -05:00
4eb141391b add md5 sum check for Eigen3 download via Install.py 2019-01-14 15:03:07 -05:00
23ad82a074 add md5sum check for ScaFaCoS download via Install.py 2019-01-14 15:02:38 -05:00
ef25afcedb update Install.py for ScaFaCoS to use argparse 2019-01-14 14:44:32 -05:00
e4cf409d69 update default Eigen3 version to the latest release 2019-01-14 14:13:53 -05:00
c3a15e221d use sys.exit() instead of the removed error() function 2019-01-14 14:13:40 -05:00
59559f74e6 make smd/Eigen library Install.py script use argparse module 2019-01-14 13:55:22 -05:00
1e1f754d0c make gpu library Install.py use argparse module 2019-01-14 12:52:21 -05:00
8d4bfa1aa7 port plumed and mscg Install.py files to use argparse 2019-01-14 12:52:21 -05:00
3aacea671e use argparse in colvars lib build 2019-01-14 12:52:21 -05:00
4e7329151d update generic Install.py script to use argparse 2019-01-14 12:52:21 -05:00
aad8dd1462 use argparse for more consistent and robust argument parsing.
this uses the code in PR #1244 as template. it supersedes the PR and thus closes #1244
2019-01-14 12:52:21 -05:00
02bdda0d05 Merge branch 'remove-reax-meam' into collected-post-stable-patches 2018-12-12 00:14:58 -05:00
0a610cb482 Merge branch 'sllod' into collected-post-stable-patches 2018-12-12 00:14:33 -05:00
d15e4b1546 Merge branch 'master' into remove-reax-meam 2018-12-11 23:31:48 -05:00
8b5887bfb1 remove MEAM and REAX from lib folder 2018-12-10 12:05:29 -05:00
fb08d3ea46 ignore MSCG build folder more generally 2018-12-10 11:25:24 -05:00
45b6b4bf52 Merge branch 'python-script-portability' into collected-post-stable-patches 2018-12-03 19:47:37 -05:00
be721fe75a more Install.py refactoring 2018-12-03 19:47:10 -05:00
4168855ba3 reduce distracting nvcc (or rather ptxas) verbosity 2018-12-03 19:27:03 -05:00
4adbacf8e5 Merge branch 'python-script-portability' into collected-post-stable-patches 2018-12-03 19:14:47 -05:00
d603d084c4 Fix typo, whitespace cleanup 2018-12-03 18:12:10 -05:00
46c0be57de Restore deleted deps file (if deletion is intentional, please delete again) 2018-12-03 18:08:27 -05:00
db2c8887cf Merge branch 'python-script-portability' into collected-post-stable-patches 2018-12-03 17:50:47 -05:00
e5c555fa7d consolidate shared code from various Install.py files into install_helpers.py 2018-12-03 17:50:20 -05:00
98728cddbe Merge remote-tracking branch 'devel/python-script-portability' into collected-post-stable-patches 2018-12-03 15:18:03 -05:00
e4ca5b1889 Merge pull request #1232 from akohlmey/collected-small-fixes
First chunk of collected small fixes for the stable release
2018-11-29 18:19:12 -05:00
cda3227b05 plug memory leak in poems library 2018-11-29 16:41:11 -05:00
6705777f7b fix memory issue in POEMS library, where auxiliary data was cast to a data structure of different (smaller) size when deleting.
this commit adds support to a callback function that allows to delete aux data in the Tree with its native size.
2018-11-29 16:34:41 -05:00
eda79bd1c2 use shutil.rmtree() instead of calling 'rm -rf' for increased portability 2018-11-28 20:46:50 -05:00
22e774adef Revert "Add --noinstall flag to use the plumed source code directly without issuing make install"
This reverts commit a4684e2629.

Revert --noinstall flag commit
2018-11-28 17:37:24 +01:00
8213287966 detect the number of available CPU for plumed make, as suggested by @akohlmey 2018-11-28 16:09:05 +01:00
a4684e2629 Add --noinstall flag to use the plumed source code directly without issuing make install 2018-11-28 15:43:35 +01:00