Commit Graph

7403 Commits

Author SHA1 Message Date
9cf99ef479 Merge pull request #806 from vishalkenchan/new_pair_lj_cut_coul_wolf
Lennard-Jones with Coulomb interactions accounted through Wolf sum
2018-02-20 11:55:37 -07:00
7ec4a5818d add USER-OMP versions of lj/cut/coul/wolf 2018-02-18 16:38:50 +01:00
65870843a5 fix typo in stride2() description in variable command docs reported by Jerome Guterl 2018-02-18 15:37:35 +01:00
c864e55adb Lennard-Jones potential with Coulomb interactions accounted through Wolf summations 2018-02-18 14:20:59 +01:00
3d12cff8a5 Merge branch 'patch-1' of https://github.com/evoyiatzis/lammps into collected-small-changes 2018-02-16 10:55:25 +01:00
a30ede80a6 avoid triggering misformatting of manual overview table with txt2html 2018-02-15 12:12:19 +01:00
2aa693c46c update authors list and packages from http://lammps.sandia.gov/authors.html 2018-02-15 05:06:54 -05:00
69f813b22e fix up formatting of tutorials for PDF manual 2018-02-13 16:41:23 +01:00
b3693f891b different style of AtC page headers that works well with html and pdf 2018-02-13 16:40:50 +01:00
1a213363f1 add group style to create an empty group directly 2018-02-13 14:54:30 +01:00
60f411d655 update manual content list for recent updates 2018-02-13 12:47:36 +01:00
7b551bb594 add a short command overview page for the PDF manual only 2018-02-13 12:47:05 +01:00
b0d8fb2170 promote header levels for better formatting in pdf manual 2018-02-13 12:43:56 +01:00
44faa8e9f5 insert new toplevel text into USER-ATC docs, change header levels. 2018-02-13 12:43:32 +01:00
3ceec36b84 improve format 2018-02-13 12:38:48 +01:00
f890cdfb9e correct formatting in fix atc docs 2018-02-13 11:44:07 +01:00
3a909e15ae remove non-functional doxygen generated navigation header from AtC doc files 2018-02-13 11:43:52 +01:00
a04a975d3a add large nylon example for parallel validation, reformat doc page 2018-02-11 17:35:47 -07:00
7e78738c73 patch 5Feb18 2018-02-09 14:26:21 -07:00
3528f9ca27 fix bugs in documentation and implementation of atom style mdpd 2018-02-09 15:19:01 +01:00
996c62f4e0 fix bond/react: generalized classical chemical reactions 2018-02-07 21:58:05 -07:00
49745968f2 make link unambiguous so sphinx is not confused 2018-02-06 16:57:27 +01:00
1d403b2aa3 Added warning to discourage use of group all and fixed some segfault cases 2018-02-05 13:29:14 -07:00
401bfc52e1 Merge pull request #798 from akohlmey/always-use-internal-xdr
Replace OS provided XDR support with bundled code
2018-02-02 14:47:40 -07:00
7441b062e9 Merge pull request #792 from pastewka/18_dump_nc1
Dumping to multiple files failed with an error message complaining about a missing 'append yes' option.
2018-02-02 14:45:52 -07:00
10d80ba9c3 Merge pull request #791 from akohlmey/charmm-cmap-docs-reference
Update CMAP related docs and rebuild example input decks
2018-02-02 14:44:58 -07:00
e4a1826dee Merge pull request #783 from numericalfreedom/lammps-doxygen
Added double quotes to a word in Section_tools.txt file
2018-02-02 14:41:56 -07:00
160edc9532 Merge pull request #782 from hheenen/user-mofff-contribution
User mofff contribution
2018-02-02 14:41:28 -07:00
553b3ff69a Merge pull request #778 from athomps/fix_gcmc_segfault_fix
Fixed recent segfault in fix gcmc and added mcmoves keyword
2018-02-02 14:40:14 -07:00
4af14becb5 Merge pull request #710 from rpleite/add-pair-ufm
Add the UFM pair potential - (GPU/OPT/OMP)
2018-02-02 14:38:28 -07:00
85fdf9eaba make links to papers unique across files 2018-02-02 10:10:27 +01:00
2ff278defa fully integrate ufm into documentation 2018-02-02 10:02:44 +01:00
c3d1cee5f9 try to use OS-provided (and obsoleted) RPC headers for XDR. always use bundled code 2018-02-02 09:23:02 +01:00
b70149e86a include added docpages in toctrees for sphinx 2018-02-01 18:50:25 +01:00
080ce422ae correct incorrect reference 2018-02-01 18:40:28 +01:00
cc54848f7b adapt to current manual conventions 2018-02-01 18:40:17 +01:00
9cf4ac8b7c DOC: Added netcdf and netcdf/mpiio to dump style supporting atom attributes. 2018-01-28 14:24:28 +01:00
cf8dae5ef3 explain position of fix cmap command in input for data and restart files 2018-01-28 06:20:03 -05:00
ba68548e38 clarify ch2lmp commands purpose in tools section 2018-01-28 06:19:33 -05:00
13c08225ed per-atom property dynamic group 2018-01-23 00:16:51 -07:00
e72faf3d7f Added double quotes to a word in Section_tools.txt file in order to activate
Sphinx hyperlink.
2018-01-21 20:55:04 +01:00
f7e2bf239f Added MOF-FF src, doc and example files 2018-01-21 11:40:48 +01:00
9bb7f1ddf6 Fixed recent segfault in fix gcmc and added mcmoves keyword 2018-01-17 13:45:15 -07:00
5e9d257ec2 patch 17Jan18 2018-01-17 13:00:48 -07:00
1b91c0eab0 fix typo in docs resulting in broken link 2018-01-16 21:01:25 -05:00
f2c0c4a7d1 Merge branch 'lammps-tools-doxygen' of https://github.com/numericalfreedom/lammps into lammps-tools-doxygen 2018-01-16 18:39:08 +01:00
e07a6d1e34 Merge pull request #768 from akohlmey/collected-doc-fixes
collected documentation fixes
2018-01-16 09:03:45 -07:00
57dd6c78c1 Merge pull request #761 from stanmoore1/kk_snap
Kokkos version of Pair SNAP and ZBL
2018-01-16 09:00:52 -07:00
c8b5d83cc7 mention tool/doxygen folder in tools section and refer to README file 2018-01-15 10:43:30 -05:00
61ebf6265a address some formatting/markup issues reported by Nandor Tamaskovics 2018-01-12 12:50:02 -05:00