Commit Graph

23502 Commits

Author SHA1 Message Date
ea3af3c2bc resolve delete/free() mismatch 2020-10-01 09:34:38 -04:00
6928e79883 Merge pull request #2395 from rbberger/collected-small-fixes
Fixes issues found via Static Code Analysis and from bug reports
2020-09-30 19:23:52 -04:00
cbc529881c support hybrid atom styles in in fix propel/self 2020-09-30 14:07:46 -04:00
23279836c9 Invalidate pointer after deallocation 2020-09-30 09:10:40 -04:00
e0e4e516fc Merge pull request #2396 from akohlmey/openmp-compat-auto
Autodetect OpenMP compatibility setting for known compiler signatures
2020-09-28 13:14:13 -04:00
25bda86ad0 fix typo 2020-09-28 12:52:32 -04:00
d8b55ecd65 Merge pull request #2397 from akohlmey/remove-cilk-array-notation
Remove specializations using cilk array notation from USER-INTEL
2020-09-28 11:56:02 -04:00
407f445753 remove specializations using cilk array notation 2020-09-28 07:32:11 -04:00
fdbdd26585 include intel fortran compiler into intel cmake preset 2020-09-26 22:30:21 -04:00
b11b420b08 small doc update for singularity 2020-09-26 22:30:05 -04:00
d23f7d14c9 typo 2020-09-25 22:20:31 -04:00
7e68746ebe use safe reader function 2020-09-25 22:16:19 -04:00
adef7d4e18 need to check for nthreads < 1 only if OpenMP is enabled 2020-09-25 22:14:21 -04:00
909960514a avoid unneeded division 2020-09-25 22:10:51 -04:00
6967522a4f fix logic error 2020-09-25 22:08:28 -04:00
172bb6050a use safe read function 2020-09-25 22:08:22 -04:00
a963e85846 remove dead code 2020-09-25 21:50:53 -04:00
66c4627775 Merge branch 'collected-small-fixes' of github.com:rbberger/lammps into collected-small-changes 2020-09-25 18:14:50 -04:00
2ffa50f2f8 fix memory leak 2020-09-25 18:13:52 -04:00
ab08a27731 correct data layout for creating integrate style 2020-09-25 18:00:47 -04:00
bd60174fd3 fix argument dimensions 2020-09-25 18:00:19 -04:00
c0384eb264 update code owners 2020-09-25 17:52:51 -04:00
c496b18a9d avoid memory leak 2020-09-25 17:50:02 -04:00
d1321a0860 fix argument dimensions 2020-09-25 17:49:52 -04:00
e378532003 avoid 32-bit integer overflow 2020-09-25 17:31:49 -04:00
5e110fe707 update docs for autodetected OpenMP compatibility 2020-09-25 16:45:39 -04:00
2e67aa6b47 autodetect OpenMP 4.0 semantic compatibility if not explicitly set 2020-09-25 16:31:45 -04:00
26ad664079 Avoid string duplication and remove memory leak 2020-09-25 13:44:28 -04:00
28812b1ea7 Merge pull request #2381 from akohlmey/collected-small-changes
Collected small changes
2020-09-24 16:17:28 -04:00
08270c3498 update container descriptions 2020-09-24 02:17:26 -04:00
02c1480546 update README in examples/COUPLE/simple 2020-09-24 02:17:11 -04:00
ac78f8f1e1 update examples/COUPLE/simple sources to work with the current version of LAMMPS 2020-09-24 01:30:34 -04:00
b350dce573 improve error messages for variables and python commands 2020-09-23 19:02:55 -04:00
2f8a5ddd1f xindy doesn't seem to be required (and is not available on CentOS 8) 2020-09-23 17:13:09 -04:00
85fe94a6dd Merge pull request #2388 from jrgissing/molecule_fragments_check
molecule: findfragments correction
2020-09-23 15:54:37 -04:00
790f636523 rephrase 2020-09-23 15:45:29 -04:00
b6d98707ec molecule: revert overzealous error checking 2020-09-23 11:23:10 -04:00
2b30661b07 molecule: correctly update docs 2020-09-23 10:46:23 -04:00
1be766c8cd molecule fragment: let's add more checks 2020-09-23 10:37:33 -04:00
ed3975054a fix typo 2020-09-23 10:30:19 -04:00
e29f838121 also add error checks 2020-09-23 10:28:48 -04:00
88b8461e0f the right molecule fragment fix 2020-09-23 10:19:38 -04:00
343932f220 document -DLAMMPS_TRAP_FPE 2020-09-23 09:38:07 -04:00
ab4dc9c343 Merge pull request #2378 from junghans/cmake_install_fix
cmake: do not install mpi.h without library
2020-09-22 21:37:57 -04:00
20027cc7ec Merge pull request #2390 from Vsevak/hip_pppm_fix
Fix atomicAdd in PPPM/GPU for the HIP backend
2020-09-22 18:04:12 -04:00
9df1bb4db0 remove obsolete makefiles. Makefile.xk7 is on death watch but Blue Waters still has such nodes 2020-09-22 17:47:14 -04:00
459d51bbea Do not disable atomics for HIP
atomics are disabled for NVIDIA 1.0 cards, which should not affect ROCm HIP
2020-09-22 22:34:24 +03:00
7b4304577a add -std=c++11 flag to compilation of all .cpp files on Linux 2020-09-22 10:58:54 -04:00
2d7b6a9008 remove dead code 2020-09-22 10:12:59 -04:00
b878403aee update a few more singularity container definitions for doc build requirements 2020-09-22 06:01:34 -04:00