Commit Graph

498 Commits

Author SHA1 Message Date
179e84f282 replace dos/windows-style CR-LF line endings with unix style LF-only 2018-11-24 16:57:01 -05:00
b76c7ddc84 correct some incorrect writedata and single_enable settings 2018-11-22 09:22:58 -05:00
b34dac41c2 port documentation spelling fixes to comments or strings in source code. 2018-11-19 16:15:24 -05:00
6e225d90fc fix some minor bugs write data file writing and remove dead code and silence compiler warnings 2018-11-15 16:50:56 -05:00
1fc3b4618c remove dead code and silence compiler warnings 2018-11-15 16:50:56 -05:00
84fcf01bed bond/react: allow custom update of charges near template edges
also, fixes a bug introduced in PR #1189, when not using stabilization
2018-11-06 19:59:22 -07:00
6d1ea2d0b1 broke smooth restarts at some point. fixed 2018-11-05 00:46:53 -07:00
f7aa01d74a bond/react: convert group-ID to group-ID-prefix
enables consistent syntax when using custom groups
2018-11-03 11:57:46 -06:00
0c7c344e19 additional molecule templates sanity-check
thanks to Sagar Patil for report
2018-11-01 01:26:12 -06:00
5821a5ecc8 bond/react: custom group with stabilization option 2018-11-01 01:04:45 -06:00
3faecc4d28 add option to update all atoms' atomic charges
option to update all atomic charges, even when edge atoms are defined
2018-10-30 22:11:52 -06:00
a1266a1a1e Fix compile error with copysign function 2018-10-10 14:19:23 -06:00
791024586e Merge pull request #1131 from ckadding/master
Add compute_pressure_cylinder to USER-MISC package
2018-10-09 18:40:02 +02:00
a549752764 reduce compiler warnings and some more whitespace adjustments 2018-10-02 15:18:15 -04:00
590ab1661e convert more system headers to c++ style 2018-10-02 15:17:11 -04:00
08b135ce6b Apply uniform LAMMPS formatting 2018-10-02 14:54:09 -04:00
a6ba55080f Use MathConst namespace 2018-10-02 14:33:49 -04:00
e3b80e734a remove trailing whitespace 2018-10-02 12:37:13 -04:00
ff7449b29a ensure, that we have no division by zero and add an upper limit for bins 2018-10-02 12:27:05 -04:00
13d3903e8d integrate compute pressure/cylinder into build and README 2018-10-02 11:56:29 -04:00
c7c0defa77 Insert a comma 2018-10-02 10:45:43 -04:00
ac658a17fc Update compute_pressure_cylinder.cpp 2018-10-02 10:34:08 -04:00
af5ac6bcdf Add NULL pointers to constructor init 2018-10-02 09:55:37 -04:00
89c0655809 Add input validation 2018-10-02 09:46:53 -04:00
3a0cfc1d57 Modifying headers 2018-10-02 09:32:26 -04:00
dba8f9c62b Merge pull request #1137 from dilkins/fast-forward-langevin
Fast-forward Langevin functionality included in USER-MISC package
2018-10-02 14:19:37 +02:00
d5e71e7099 enumeration of flip types 2018-10-02 10:41:55 +02:00
14251948f3 LAMMPS coding conventions 2018-10-02 10:18:40 +02:00
799ffc58d9 C++ system headers included and enumeration of flip_int used;documentation corrected 2018-10-01 17:13:56 +02:00
21c59d4cf0 Fast-forward Langevin functionality included 2018-09-28 12:46:11 +02:00
918030bf1c Merge branch 'master' of https://github.com/oywg11/lammps into ilp-update 2018-09-24 10:29:08 -04:00
5aeba421bb Add compute_pressure_cylinder .cpp and .h files 2018-09-20 09:15:43 -04:00
e9ed95c2db Merge pull request #1108 from akohlmey/fix-sprintf-buffer-overflows
Avoid more buffer overflows due to using snprintf() on fixed size buffers
2018-09-18 16:57:10 -04:00
0c287a55cd Merge pull request #1092 from RomainVermorel/master
New stress/mop and stress/mop/profile computes for USER-MISC
2018-09-17 05:16:42 -04:00
7054800932 Merge branch 'master' into master 2018-09-12 22:13:43 +03:00
83b6d6ae96 small modifications of potential #839 2018-09-12 17:47:16 +03:00
1f5885fc45 Merge pull request #1099 from jrgissing/bond/react-efficient-competing_reactions
bond/react: efficient competing reactions
2018-09-11 21:18:41 -04:00
b915716b60 fix inconsistency resulting from error in auto-replace macro 2018-09-06 12:27:10 -04:00
9c27548a5c more replacing of sprintf() with snprintf() 2018-09-06 10:45:48 -04:00
5003354fba Replaced a tab with whitespace. 2018-09-05 11:42:48 -04:00
779f1bd0b1 Fixes a bug in pair_morse_smooth_linear where the cutoff was not properly initialized. 2018-09-05 11:27:10 -04:00
0c92c22755 moved contents of USER-MOP package to USER-MISC as suggested by @sjplimp 2018-09-05 10:56:12 -04:00
ae7b18fb77 only one call to extract needed 2018-09-05 00:11:50 -06:00
efd81a2854 Merge branch 'master' into bond/react-efficient-competing_reactions 2018-09-04 22:34:04 -06:00
a5f7b418de bond/react: efficient competing reactions 2018-09-04 22:06:49 -06:00
40e7ea83a3 Merge pull request #1084 from rbberger/cmake-and-warning-suppression-bugs
Fixes various compilation issues
2018-08-29 07:49:52 -06:00
ed61ed5b56 Merge pull request #1082 from jrgissing/bond/react-competing-reactions
Bond/react: treatment of simultaneous competing reactions
2018-08-29 07:49:25 -06:00
71bc72ec13 formatting: add additional space to avoid bad syntax highlights 2018-08-27 22:13:43 -04:00
41fff2979e Merge pull request #1077 from dschwen/warnings_1076
Fix compile warnings when building with pedantic flags
2018-08-27 17:14:34 -06:00
b05aa62c49 correctly exclude atoms from simultaneous competing reactions 2018-08-25 15:46:48 -06:00