Commit Graph

1098 Commits

Author SHA1 Message Date
dc85234bf6 remove unneeded files from voro++ library 2015-08-26 00:24:58 -04:00
06f8fa153c remove direct HDF5 API call from main code; redirect to wrapper library instead 2015-08-24 18:05:43 -04:00
d77b7c2b77 compile h5md library correctly 2015-08-24 16:03:05 -04:00
fd629d412d step 1 on merging changes from ch5md to h5md 2015-08-24 15:49:27 -04:00
0fa1a952e0 rename h5md library path to which git seemed to have missed. 2015-08-24 15:45:25 -04:00
d287261e17 next attempt to fix the HDF5 compilation on Travis CI's ubuntu VMs. 2015-08-24 15:34:03 -04:00
591bb6f464 not all HDF5 calls are abstraced by wrapper library. need compatibility define in regular build, too. 2015-08-24 15:23:30 -04:00
54a14b07a3 change settings for H5MD support, so it compiles on ubuntu 12.04 LTS and add to CI 2015-08-24 15:06:45 -04:00
187e0b9ce4 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2015-08-21 06:48:52 -04:00
fec0587835 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13926 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-20 16:53:24 +00:00
3fcbe43295 Commented out line (temporarily) that causes a segmentation fault in the USER-AWPMD library
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13925 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-20 15:55:19 +00:00
e5f316ecf1 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
# Conflicts:
#	doc/Manual.html
#	doc/Manual.txt
#	doc/Section_start.txt
#	doc/dump_h5md.html
#	doc/dump_h5md.txt
#	doc/package.txt
#	src/COMPRESS/dump_atom_gz.cpp
#	src/Makefile
#	src/USER-H5MD/README
#	src/pair.cpp
2015-08-20 07:42:31 -04:00
494ee3b26c Updating Kokkos library--adding new folder
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13922 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-19 22:17:15 +00:00
e2ac7b2352 Updating Kokkos library--first deleting old folder
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13921 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-19 22:12:32 +00:00
e2f07a155c MEAM library does not play well with clang. force using gcc 2015-08-19 17:24:57 -04:00
3e90c3eeab git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13913 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:43:07 +00:00
185e746ccb git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13908 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:19:08 +00:00
071ded95fc git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13907 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:16:24 +00:00
21f8abda24 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13906 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 15:15:32 +00:00
1c3e0dbfe9 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13904 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-19 14:56:21 +00:00
55c32a2e06 colvars update 2015-08-12 2015-08-14 09:28:24 -04:00
89df652bda add custom build fedora laptop 2015-08-13 08:22:30 -04:00
83f21d479c convery library compression styles into "COMPRESS" package 2015-08-12 08:08:22 -04:00
c020fba2a1 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
# Conflicts:
#	src/USER-SMD/Install.sh
2015-08-11 10:02:23 -04:00
4731f7e94a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13856 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-10 20:35:31 +00:00
f2276c9d9f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13854 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-10 20:27:45 +00:00
23b6b284ce include stripped down copy of Eigen3 for USER-SMD 2015-08-07 00:37:10 -04:00
4fef3cd9f0 Merge branch 'lammps-icms' of bitbucket.org:akohlmey/lammps-icms into lammps-icms 2015-08-06 00:57:28 -04:00
5107280519 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
# Conflicts:
#	doc/Manual.html
#	doc/Manual.txt
2015-08-06 00:51:11 -04:00
2f7344a02a git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13831 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-04 19:55:02 +00:00
dc55db069c clarify a few more things for integration of HDF5 support 2015-08-03 17:20:19 -04:00
0aa79be6a1 adjust build system to be more consistent with LAMMPS conventions 2015-08-03 17:04:09 -04:00
9d56187805 reduce amount of warnings printed 2015-08-03 17:03:43 -04:00
c175e7f180 Merge branch 'start_dump_h5md' of git://github.com/pdebuyl/lammps into merge_hdf5_support 2015-08-03 16:44:30 -04:00
7e942ca0dc mention 2015 and later debian hdf5 path 2015-08-03 22:20:32 +02:00
d0219deb68 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13670 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:36 +02:00
ff00be0f7b Adding missing Kokkos file
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13636 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-03 21:00:34 +02:00
c8c7a9112f git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13583 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:32 +02:00
dc8be5a687 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13581 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:32 +02:00
b454320b14 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13506 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:28 +02:00
56374182d7 Describes new QUIP directory structure
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13499 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-03 21:00:28 +02:00
8e1b8924c2 Updated to new QUIP directory structure
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13493 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-03 21:00:28 +02:00
2d8a03f094 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13464 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:25 +02:00
c1723ed658 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13445 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:24 +02:00
acd443aa42 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13444 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:24 +02:00
e76e023a95 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13400 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:22 +02:00
da3fd3bcb2 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13396 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-08-03 21:00:22 +02:00
db2fe9d1c3 Added one-liner for QUIP
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13394 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-08-03 21:00:22 +02:00
444e9f3db2 import GPU library update from Trung 2015-08-02 10:45:35 -04:00
6e40300d26 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13670 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-07-22 14:36:59 +00:00