Commit Graph

1756 Commits

Author SHA1 Message Date
64d7bbb375 Bugfix from Trung for running EAM on GPUs with OpenCL. 2025-05-30 16:43:16 -04:00
748ffe0fa6 wrong qi*qj cuda code
correction of cutsq[mtype].z instead of extra[j].x !
2025-03-25 03:03:28 -04:00
9845e070a9 Add cherry-picked bugfix extracted from Colvars feature branch 2024-12-17 09:24:11 -05:00
d485647d02 Set update version to reflect upcoming LAMMPS release "29 Aug 2024 update 2" 2024-12-16 14:56:22 -05:00
d49bed3c27 Fixes for the Colvars library
- 759 min_image fix; Saves long runs from crashes;
  https://github.com/Colvars/colvars/pull/759 (@PolyachenkoYA)

- 728 Fix undefined behavior when getting the current working directory from std::filesystem
  https://github.com/Colvars/colvars/pull/728 (@giacomofiorin)

- 724 Fix gradients and metric functions of distanceDir
  https://github.com/Colvars/colvars/pull/724 (@giacomofiorin)

- 715 Add missing rotation in orientation component
  https://github.com/Colvars/colvars/pull/715 (@giacomofiorin)

- 713 fix: try to solve #87 for non-scala components
  https://github.com/Colvars/colvars/pull/713 (@HanatoK)

- 706 BUGFIX for Segmentation fault in colvarbias_meta::calc_energy() with useGrids off
  https://github.com/Colvars/colvars/pull/706 (@alphataubio)

- 701 Do not try accessing LAMMPS proxy object before allocating it
  https://github.com/Colvars/colvars/pull/701 (@giacomofiorin)

Authors: @alphataubio, @giacomofiorin, @HanatoK, @PolyachenkoYA
2024-12-16 17:37:31 +01:00
a3cd14bb82 fixed a bug with three_ilist when used with pair hybrid 2024-11-12 17:32:02 -05:00
7377d6cc20 enable deprecated APIs for HDF5 2024-11-12 00:21:49 -05:00
30fabc5a28 add LAPACK functions for matrix inversion via Cholesky decomposition 2024-11-09 05:32:03 -05:00
b8466e5caf update linalg for ML-QUIP 2024-11-09 05:11:22 -05:00
a8447b419d fix bug causing memory corruption and clean up lmp_f2c.h header 2024-08-18 21:34:15 -04:00
133dee9ac1 Update Colvars library to version 2024-06-04 2024-08-06 01:07:43 +02:00
208216ba3d Merge branch 'kokkos-amd-gfx1103-support' into collected-small-fixes 2024-07-30 08:46:22 -04:00
cb6e71b72f fix typo 2024-07-30 08:46:01 -04:00
41254b26c7 backward compatibility not needed 2024-07-29 17:01:34 -04:00
e6a708d253 add support for AMD Phoenix APUs with HIP 2024-07-28 20:49:17 -04:00
26aba2c314 silence compiler warnings 2024-07-28 11:49:27 -04:00
5501f608f5 fix out of bound memory access bug detected by hipcc 2024-07-28 11:25:15 -04:00
1ed6e153b6 Merge pull request #4214 from jtclemm/rheo
New multiphase fluids package
2024-07-18 18:38:51 -04:00
f94b078936 use pkg-config instead of pkgconf consistently, since the latter comes with compatibility to the former 2024-07-03 21:21:35 -04:00
b6d11b5902 document GSL dependency and provide build instructions for RHEO package 2024-07-03 19:07:19 -04:00
96d58bb03e automatically set include/libs flags for GSL, if pkg-config is available 2024-07-03 18:32:42 -04:00
e1232af867 Missing flag and changing dependencies 2024-07-03 16:12:17 -06:00
ece17cf56f Adding rheo make support 2024-07-03 15:30:33 -06:00
778d11c79e Merge remote-tracking branch 'github/develop' into collected-small-changes 2024-06-19 14:46:04 -04:00
45508baee5 major refactor for restart, data file handling. removal of dead code. 2024-06-19 11:09:56 -04:00
f4005e350a update fix plumed API version check and add reminder comments to build files 2024-06-17 07:11:56 -04:00
4be1b41aef class n func rename 2024-06-17 10:03:06 +02:00
a4ac48addf add example file and author contrib 2024-06-14 10:13:48 +02:00
575853b27a correct headers' author 2024-06-13 17:11:54 +02:00
1b040d7108 white space fix 2024-06-13 13:49:18 +02:00
35cbc84329 Update lal_dpd_coul_slater_long.cpp 2024-06-13 10:25:56 +02:00
99263ed7d7 init_atomic with new pair name 2024-06-12 15:41:38 +02:00
3686a7fcf3 wrong cl / cubin header file names 2024-06-12 15:25:28 +02:00
84ed769ca3 changing the fix name and file names for coherence 2024-06-12 15:12:55 +02:00
7f1fbca66f update lal_base_dpd for optional charged 2024-06-12 14:30:54 +02:00
e0c2009525 update conditions, comments, better eflag handle 2024-06-10 11:33:58 +02:00
43ce6b018a update Plumed support for version 2.8.4 and 2.9.1 2024-06-09 01:30:35 -04:00
85c345cf2d duplicate calc of r 2024-06-07 16:51:32 +02:00
f5b2eb3a80 Update lal_dpd_charged.cu 2024-06-07 15:16:54 +02:00
aadeb1149d double host write, wrong dpd cond 2024-06-07 15:14:05 +02:00
afc8c752fd wrong kernel params 2024-06-07 11:31:33 +02:00
001063250e allocate extra_fields 2024-06-07 09:05:11 +02:00
7cb73ca1a1 maybe wrong scale 2024-06-06 11:23:38 +02:00
0da8be7525 Update lal_dpd_charged.cu 2024-06-06 11:20:21 +02:00
ce9f99e9c1 store_answersq for ecoul 2024-06-06 11:19:06 +02:00
71d8fe564f wrong init var and still force... 2024-06-06 10:55:26 +02:00
06f1b1bffa wrong names, old var del 2024-06-06 10:50:30 +02:00
7d2764da27 only dpd coef update 2024-06-06 10:42:09 +02:00
be298634b7 readdress force sp_cl 2024-06-06 10:40:13 +02:00
69309cab0c header fix missing var 2024-06-06 10:36:31 +02:00