Commit Graph

39370 Commits

Author SHA1 Message Date
88ccaeddc1 always return initialized data when extracting per-type info 2024-06-18 06:58:26 -04:00
ab800b4e26 skip over groups with whitepsace in their name so we don't create illegal index files 2024-06-17 17:23:05 -04:00
c867bb3e28 enable and apply clang-format 2024-06-17 17:00:00 -04:00
9856ef7d81 better error handling when processing index files with illegal group names 2024-06-17 16:57:22 -04:00
318b43f358 update group2ndx/ndx2group docs 2024-06-17 15:02:43 -04:00
f4005e350a update fix plumed API version check and add reminder comments to build files 2024-06-17 07:11:56 -04:00
4be1b41aef class n func rename 2024-06-17 10:03:06 +02:00
d8c88c70ea Merge pull request #4189 from evoyiatzis/patch-2
Update fep.py
2024-06-16 01:27:42 -04:00
7704227bfb Merge pull request #4195 from jtclemm/small-patches
Various small patches for GRANULAR and BPM packages
2024-06-16 01:26:01 -04:00
59fb8a6835 avoid segfault trying to delete non-copied style 2024-06-15 14:08:14 -04:00
d2ea3b1ac5 add some tests for new features 2024-06-15 08:28:52 -04:00
ee0dd80cbe fix another typo 2024-06-15 06:17:13 -04:00
9b52f66a5a fix typos 2024-06-15 05:55:45 -04:00
cb3aa07287 update PyLammps to use added properties directly instead of parsing them. 2024-06-14 20:21:19 -04:00
1ce94e47d8 also make "comm->ghost_velocity" accessible 2024-06-14 20:20:53 -04:00
77b610a2bd also make comm->style, comm->layout, and comm->mode accessible through the library interface 2024-06-14 20:04:21 -04:00
514039ed62 library: add comm->procgrid to extract_global 2024-06-14 08:10:24 -06:00
a4ac48addf add example file and author contrib 2024-06-14 10:13:48 +02:00
11ef510a93 Merge branch 'lammps:develop' into improve_type_label_support 2024-06-13 19:26:42 -04:00
03251e823f add terminal newline 2024-06-13 15:20:12 -04:00
fb23df7bf7 example input file 2024-06-13 17:35:45 +02:00
575853b27a correct headers' author 2024-06-13 17:11:54 +02:00
8eec17d409 add missing file for CMake build 2024-06-13 09:26:23 -04:00
e95598a716 doc fixes 2024-06-13 09:17:09 -04:00
397dc9a7f6 build system and maintenance updates 2024-06-13 09:13:55 -04:00
4b0adcc66a avoid segfaults when updating charts in simulations with fast thermo output 2024-06-13 08:34:25 -04:00
3865dda5a2 integrate new doc file into manual 2024-06-13 08:33:40 -04:00
1b040d7108 white space fix 2024-06-13 13:49:18 +02:00
8bbbe2dd6b Update pair_dpd_coul_slater_long.rst 2024-06-13 11:43:57 +02:00
35cbc84329 Update lal_dpd_coul_slater_long.cpp 2024-06-13 10:25:56 +02:00
ce7ba21b8b clarify potentially misleading comment 2024-06-12 17:02:25 -04:00
67d86b559e Clarifying BPM logic and removing spelling errors in doc 2024-06-12 14:44:13 -06:00
53db2af179 Adding ndata accessor to bond history 2024-06-12 12:27:34 -06:00
610172b9dc Merge branch 'lammps:develop' into cg-dna 2024-06-12 17:38:20 +01:00
2434ad6574 doc page 2024-06-12 17:29:16 +02:00
99263ed7d7 init_atomic with new pair name 2024-06-12 15:41:38 +02:00
2470d621c8 wrong header name... 2024-06-12 15:31:28 +02:00
3686a7fcf3 wrong cl / cubin header file names 2024-06-12 15:25:28 +02:00
84ed769ca3 changing the fix name and file names for coherence 2024-06-12 15:12:55 +02:00
7f1fbca66f update lal_base_dpd for optional charged 2024-06-12 14:30:54 +02:00
1a310f5729 Limit CoeffRest gran damping to non-cohesive, prevent potential nans 2024-06-11 17:03:15 -06:00
5ff853ce67 Merge branch 'develop' into small-patches 2024-06-11 16:56:28 -06:00
c190318649 Small doc page clarifications 2024-06-11 16:53:10 -06:00
7bb0da5255 Increased checks for broken bonds in bond BPM 2024-06-11 16:11:24 -06:00
2d9aad67d0 Consistent newton checks compute nbond/atom 2024-06-11 15:24:34 -06:00
e0228d1f15 Bond history compatability delete atoms 2024-06-11 13:16:34 -06:00
09bea938c5 fix copy-n-paste error 2024-06-10 14:26:32 -04:00
d61c94c0f3 move group2ndx and ndx2group to new EXTRA-COMMAND package. update docs. 2024-06-10 14:14:36 -04:00
567ba1f437 improve R value for SI units 2024-06-10 19:37:35 +02:00
77c04d3827 cosmetic changes 2024-06-10 09:15:14 -04:00