905d93f8c5
doc bugfix from lammps-users mailing list
2013-06-23 14:55:58 +02:00
f3bdaa2823
Merge remote branch 'lammps-ro/master' into lammps-icms
2013-06-19 13:27:07 +02:00
e6d02199ba
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10089 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-18 14:05:06 +00:00
7dff116588
Merge remote branch 'lammps-ro/master' into lammps-icms
...
Resolved Conflicts:
doc/Manual.txt
2013-06-18 13:15:56 +02:00
bb5c918345
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10086 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-17 19:16:03 +00:00
e2a69eaab9
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10083 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-17 19:14:15 +00:00
c43fe0a6f6
idiot-proof defining bonds with manybody potentials
...
add a test to check if manybody potentials are used with bonds
and (default) exclusion flags that cull pairs from the neighborlist.
now careless use of topology data with resulting in excluded
interactions will generate an error. for the few legitimate use
cases, the test can be turned off.
2013-06-17 21:12:04 +02:00
b7efab2277
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10081 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-17 16:08:18 +00:00
fbdc189121
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10079 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-17 15:20:05 +00:00
dd1b0ebbc5
Merge remote branch 'lammps-ro/master' into lammps-icms
...
Resolved Conflicts:
doc/Manual.txt
2013-06-15 16:03:01 +02:00
61a1847026
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10076 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-14 14:28:01 +00:00
bdc5a705e9
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10074 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-14 14:27:42 +00:00
268774b0f9
include colvars reference documentation in distribution
2013-06-14 12:21:34 +02:00
f14985a683
Merge remote branch 'lammps-ro/master' into lammps-icms
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Resolved Conflicts:
src/Make.py
2013-06-11 13:16:23 +02:00
80293450b5
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10069 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-10 23:43:19 +00:00
c1ecc75d5b
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10066 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-10 15:03:30 +00:00
e240e15c4d
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
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Resolved Conflicts:
doc/Manual.txt
src/USER-MISC/dihedral_nharmonic.cpp
src/USER-MISC/pair_lj_sf_dipole_sf.h
2013-06-09 14:35:36 +02:00
be25ac9878
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10061 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-08 22:02:17 +00:00
65a19bf52b
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10056 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-08 21:50:21 +00:00
c9710e0c20
Merge remote branch 'lammps-ro/master' into lammps-icms
...
Resolved Conflicts:
doc/Manual.txt
src/DIPOLE/pair_lj_cut_dipole_cut.cpp
src/USER-MISC/pair_lj_sf_dipole_sf.cpp
src/USER-MISC/pair_lj_sf_dipole_sf.h
2013-06-07 14:49:08 +02:00
7c021cd57e
get rid of non-ASCII characters
2013-06-07 11:02:14 +02:00
e63ae146f4
Cleanup of colvars documentation. Reference github project URLs.
2013-06-07 09:29:38 +02:00
51814ba9bd
Added GJF Langevin method
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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10046 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-06 18:11:00 +00:00
fcf628fab6
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10043 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-06 16:08:31 +00:00
acd168812e
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10042 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-06 16:04:40 +00:00
ca981d4e9b
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10039 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-06 15:22:24 +00:00
e61a6b2250
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10036 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-06 15:19:12 +00:00
f68c9e8386
Merge remote branch 'lammps-ro/master' into lammps-icms
...
Resolved Conflicts:
doc/Manual.txt
src/lattice.cpp
2013-06-05 14:04:27 +02:00
34185a80b1
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10020 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-04 20:25:16 +00:00
4b8e84a2d6
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10013 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-06-04 15:15:31 +00:00
ad2a00bf17
small corrections to the pair style list docs
2013-06-02 12:42:32 +02:00
ce2b853e4a
Merge remote branch 'lammps-ro/master' into lammps-icms
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Resolved Conflicts:
doc/Eqs/pair_gauss.jpg
doc/Manual.txt
doc/pair_list.html
doc/pair_list.txt
lib/atc/Makefile.lammps.linalg
lib/awpmd/Makefile.lammps.linalg
lib/gpu/Makefile.lincoln
lib/linalg/Makefile.gfortran
lib/linalg/Makefile.mingw_cross
lib/linalg/README
lib/reax/Makefile.lammps
src/USER-CG-CMM/Install.sh
src/USER-COLVARS/Install.sh
src/USER-CUDA/Install.sh
src/USER-MISC/Install.sh
src/USER-MISC/pair_list.cpp
src/USER-OMP/Install.sh
src/USER-PHONON/Install.sh
2013-06-01 13:53:34 +02:00
d193e024f2
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10006 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 18:20:26 +00:00
8d0a4ee15d
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10004 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 16:54:41 +00:00
0df45b9e75
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10002 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 16:51:16 +00:00
4205e9c9d3
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10001 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 16:50:53 +00:00
4065c19102
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10000 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 16:38:31 +00:00
1b85fa692f
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9996 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 15:48:00 +00:00
ab271789f7
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9995 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 15:47:56 +00:00
0e032e0785
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9994 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 15:40:10 +00:00
6732c9bbc0
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9993 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-31 15:39:56 +00:00
0e9dc07889
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9985 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-30 21:09:28 +00:00
2ab555de25
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9982 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-30 21:03:27 +00:00
9809978a82
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9933 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-30 14:10:30 +00:00
c8f4692141
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
...
Resolved Conflicts:
src/Package.sh
2013-05-30 11:45:16 +02:00
a882513801
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9930 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-28 23:12:56 +00:00
56f41275d3
update documentation to reflect that fix colvars now supports restarts
2013-05-27 10:05:56 +02:00
34c103e2c9
Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
...
Resolved Conflicts:
doc/Manual.txt
src/Depend.sh
2013-05-26 11:57:22 +02:00
1ccf84c21c
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9926 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-24 22:30:00 +00:00
b6ff322129
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9922 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2013-05-24 21:55:29 +00:00
