Commit Graph

29877 Commits

Author SHA1 Message Date
8323c4fe45 More progress 2022-03-11 14:14:45 -07:00
a7a66100c6 Updated the doc page of the polarize fixes 2022-03-11 14:13:34 -06:00
3f9cc03fc0 Minor tweaks 2022-03-11 11:39:06 -07:00
9e78818637 Minor tweaks 2022-03-11 11:26:06 -07:00
62c59a5339 document LAMMPS_PLUGIN_PATH environment variable 2022-03-11 10:34:04 -05:00
56658e9c2c make automatic plugin loads/unloads mostly silent, count/report number of plugins loaded 2022-03-11 10:31:53 -05:00
01bd3d1da0 add functionality to auto-load plugins 2022-03-11 05:52:26 -05:00
45b1213795 silence warnings from coverity scan 2022-03-11 04:29:01 -05:00
e8a550aa22 Reduce memory use in Kokkos package 2022-03-11 00:07:47 -05:00
9b989b1860 Merge pull request #3164 from akohlmey/collected-small-changes
Collected small changes
2022-03-10 23:42:04 -05:00
3a1921b3ed correct SHAKE bond stats output and avoid division by zero 2022-03-10 23:01:23 -05:00
ca76ff360f augment cmake library search path to include the CUDA stubs library folder
this will help configuring and compiling LAMMPS with CUDA support on
machines where there is no CUDA driver installed
2022-03-10 21:17:58 -05:00
11d3b13e31 Added a lot of boilerplate for inner data, not working yet 2022-03-10 18:40:59 -07:00
ali
7343f6e5b8 writing column names is optional 2022-03-10 15:23:21 -06:00
079f7559ea Merge branch 'develop' of github.com:fujiisoup/lammps into collected-small-changes 2022-03-10 16:01:02 -05:00
fa9683e6d2 Merge remote-tracking branch 'github/develop' into collected-small-changes 2022-03-10 16:00:55 -05:00
adef6bd10c Added first draft of inner switching functions 2022-03-10 13:58:14 -07:00
0828ae66a0 Fix a typo in the doc 2022-03-11 05:48:34 +09:00
0fcf40c48e use MathConst::MY_PI more consistently and benefit from it being a constexpr 2022-03-10 14:14:32 -05:00
8e85481afa use MathConst::MY_PI instead of inferring it from acos(-1). 2022-03-10 14:00:34 -05:00
12b144fd0e change math const from M_ to MY_ using math_const.h 2022-03-10 12:36:41 -05:00
5bf1ab0e2d try moving _USE_MATH_DEFINES to cpp file from header for windows compilation 2022-03-10 11:15:25 -05:00
1e4a6dcb41 fix missing #endif in lb/fluid header 2022-03-10 10:37:08 -05:00
c6fe7ed4f4 add _USE_MATH_DEFINES for windows compilation 2022-03-10 10:18:50 -05:00
0a1fa5e040 lb/fluid code cleanup for whitespace, unused vars, windows cmath 2022-03-10 09:53:44 -05:00
c9007501a2 remove cerr iostream reference from lb/fluid 2022-03-10 08:43:54 -05:00
43319120d0 fix qeq/dynamic and qeq/fire need half neighbor list not full 2022-03-10 06:30:10 -05:00
1bba1ca2ae fix logic bug 2022-03-10 05:44:31 -05:00
61f5bbd633 update logic to avoid stall with neighbor list statistic during final summary 2022-03-10 05:21:53 -05:00
06e7bd8144 follow KOKKOS' advice about CPU binding of threads 2022-03-10 01:18:15 -05:00
abd8a6ee15 remove incorrect comment 2022-03-10 01:17:44 -05:00
10f8a597c7 use proper header for access to Kokkos class. 2022-03-10 01:11:33 -05:00
837b8fb753 bugfix 2022-03-10 01:00:34 -05:00
86b686f159 correct handling of neighflag member variable in KOKKOS styles 2022-03-10 00:52:16 -05:00
799ab965d9 make neighbor list request flags protected and add selected friends 2022-03-09 23:25:26 -05:00
26c0b9cf87 move calculation of number of neighbors to Neighbor class
this allows reusing the code in the ImbalanceNeigh class
2022-03-09 23:18:28 -05:00
3ef02edb48 adapt KOKKOS package styles to use new neighbor list request API 2022-03-09 22:43:38 -05:00
9f44221ee3 update neighborlist requests for new API in KSPACE package 2022-03-09 21:20:18 -05:00
2e2bd37883 automatically enable intel neighbor list request property for intel pair styles 2022-03-09 21:19:19 -05:00
9b26726f51 change to clang-format for LATBOLTZ routines 2022-03-09 20:41:28 -05:00
9bbd1df57b another chunk of neighbor list request updates 2022-03-09 19:49:08 -05:00
c4b23bd7e5 programming style updates use newer/simpler APIs 2022-03-09 19:21:03 -05:00
888db4b0ef update examples to standard lammps conventions 2022-03-09 18:13:45 -05:00
e8547af049 update neighbor list requests and compute style lookups in machine learning packages 2022-03-09 06:49:07 -05:00
3bb7a247ac convert some more files to use the new neighbor list request API 2022-03-08 21:29:33 -05:00
cef5076c9a no need to have a multi-threaded neighbor list in fix peri/neigh
I builds just a single neighbor list during setup.
2022-03-08 18:23:46 -05:00
1db981c784 convert a few more styles to the new neighbor request API 2022-03-08 18:20:28 -05:00
3c3912aff2 add deprecated lb/fluid integrator fixes to fix_deprecated 2022-03-08 17:10:22 -05:00
16449c3d11 fix merge conflicts for new version of lb/fluid and minor updates from develop branch on virtual functions and removed fix styles 2022-03-08 16:38:32 -05:00
1249c713f0 Add transpose to neigh list 2022-03-08 14:28:06 -07:00