Commit Graph

63 Commits

Author SHA1 Message Date
4d7d3a5d53 Switched algorithm for compute_yi to one based on zlist ordering 2019-06-13 15:56:18 -06:00
65b87fa278 Updated SNAP in KOKKOS package so it compiles and runs 2019-06-13 09:54:56 -06:00
c5c03230cb Not part of this pull request 2019-06-12 17:05:47 -06:00
f8e257d219 Not part of this pull request 2019-06-12 17:04:05 -06:00
a973700295 Completed back-porting of Zombie SNAP improvements, particularly noteworthy is reduction in memory footprint, elimination of most multidimensional arrays, elimination of diagonal_style, elimination of Z array in force calculation. 2019-06-12 16:42:28 -06:00
0559e155f2 Implemented lists instead of multidim arrays 2019-06-11 18:24:02 -06:00
960a975e2a Added compact arrays, removed unused openmp stuff 2019-06-03 19:50:40 -06:00
803e0631c5 Added bispectrum compute 2019-05-16 22:11:06 -06:00
51a6bfd579 Added bispectrum compute 2019-05-16 22:01:45 -06:00
5b71b3fc57 Added bispectrum compute 2019-05-16 21:51:24 -06:00
98d9c45ad9 compute_bispectrum 2019-05-15 17:18:24 -06:00
e13c661f77 Added placeholder for neural network SNAP potential 2019-05-11 12:54:18 -06:00
a1f421cd54 Moved compute_beta outside of main force loop 2019-05-11 12:41:54 -06:00
6d84bd6138 Added compute_beta() 2019-05-10 10:34:01 -06:00
a243be2dc9 Added bare-bones yarray algorithm, 2x speedup 2019-04-21 22:10:03 -06:00
06a57dd659 use ev_unset for all pair styles 2019-03-13 17:49:16 +01:00
fa7e02ea71 Removed redundant element list from pair_coeff snap syntax 2018-12-03 20:28:01 -07:00
c142288eb3 Fixed a segfault introduced by memory-leak fix 2018-10-10 17:24:14 -06:00
e9ed95c2db Merge pull request #1108 from akohlmey/fix-sprintf-buffer-overflows
Avoid more buffer overflows due to using snprintf() on fixed size buffers
2018-09-18 16:57:10 -04:00
d753c51c45 The sna*/atom computes were not destroying SNA objects. Fixed. 2018-09-17 19:44:32 -06:00
9c27548a5c more replacing of sprintf() with snprintf() 2018-09-06 10:45:48 -04:00
38a998c03c Fix misc. warnings (#1076) 2018-08-24 14:58:28 -06:00
92a4dc25b1 Fix unused params in packages (#1076) 2018-08-24 10:42:08 -06:00
18c6d7f289 Fix possible MPI deadlock in pair_snap 2018-05-24 15:31:49 -06:00
1b4068b575 Restore workaround for compiler bug in pair_snap.h 2018-05-24 15:31:22 -06:00
654fec164d Merge pull request #881 from akohlmey/cplus-plus-style-includes
Replace C-style include files with their C++ equivalents
2018-05-03 11:25:51 -06:00
07a15a719f whitespace cleanup 2018-05-03 12:38:24 -04:00
75cffc78c5 updates to quadratic form of SNAP potential 2018-05-03 10:23:50 -06:00
e4071d7f46 replace C-style include files with their C++ equivalents 2018-04-27 18:00:24 -04:00
5221ac2d55 add placeholders to include files for error messges 2018-04-03 17:48:31 -06:00
59dbb49cf9 remove trailing whitespace 2018-03-16 12:37:27 -04:00
ee862d8bf5 replace leading tabs 2018-03-16 12:34:33 -04:00
4a875dc67d Workaround for compiler bug in gcc v4.9.3, manifest in KOKKOS SNAP 2018-02-23 09:01:34 -07:00
7a78875911 Fix issues in Kokkos pair snap and zbl 2018-01-13 21:31:11 -07:00
2047ae76e3 Move compute_bi outside of j-loop 2018-01-09 17:05:57 -07:00
4adbb882b3 Temper SNAP output 2018-01-09 17:05:34 -07:00
275c08453f Add Kokkos versions of pair_style snap and zbl 2018-01-09 17:03:49 -07:00
d0cc1dfbb8 changes to SNAP virial from Aidan 2017-07-13 11:19:35 -06:00
22fdb1fc14 SNAP changes by Aidan 2017-05-30 10:21:07 -06:00
addd87c0f7 new Section package and start doc pages and build scripts 2017-05-04 11:22:20 -06:00
44841f6891 fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof 2017-03-23 15:31:27 -06:00
920641bbff Merge pull request #399 from rbberger/docs_spelling_fixes
Correct spelling errors in documentation
2017-03-07 09:47:22 -07:00
efaa4c6710 new neigh_modify exclude option, other SNAP changes 2017-03-07 09:31:12 -07:00
7dd60f9737 Fix typos in src files 2017-03-05 21:03:40 -05:00
fb3ac9afba Initialize pointers in SNAP and SRD 2016-11-07 20:30:38 +01:00
876b033ea8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15083 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-31 16:33:07 +00:00
9ae8b64f9a Cleaned up sna factorial table
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14286 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-12-05 03:31:39 +00:00
f496b51d56 Changed the factorial table to static member
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14261 f3b2605a-c512-4ea7-a41b-209d697bcdaa
2015-11-17 23:10:26 +00:00
354e20f431 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14220 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 20:04:06 +00:00
56ee1b670b git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14088 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-05 15:13:56 +00:00