Commit Graph

4087 Commits

Author SHA1 Message Date
2b9646097c Merge branch 'master' of github.com:lammps/lammps 2017-09-01 09:16:11 -06:00
f58088ae61 patch 1Sep17 2017-09-01 09:15:37 -06:00
81ba181349 tweak an eq in USER-MESO, also allow neigh to be built w/out styles 2017-08-25 17:04:36 -06:00
6db3bd87ee correct typo in header formatting 2017-08-23 17:52:09 -04:00
7b7a5076d0 Merge pull request #624 from akohlmey/compute-fragment
Add computes fragment/atom and aggregate/atom
2017-08-23 14:14:33 -06:00
f7a0a6eb70 Merge pull request #622 from akohlmey/collected-small-fixes
Collected small fixes
2017-08-23 14:12:45 -06:00
97edf90a73 update fix qeq docs for the new, more flexible parameter file format 2017-08-23 11:22:09 -04:00
cdfb1aa043 make links unique, fix doc format warnings and add entries to administrative files 2017-08-23 00:39:52 -04:00
b80752a40c restore changes to read_data docs, that would have been lost due to merging an outdated version 2017-08-23 00:01:19 -04:00
5a0c3aea8a add a compute aggregate/atom, that combines the rules for compute cluster/atom and fragment/atom 2017-08-21 13:12:43 -04:00
f5b8f722ee remove non-portable non-ascii blanks from fix wall/ees docs 2017-08-20 10:09:21 -04:00
39e51df2c0 add missing entry in pdf manual 2017-08-20 10:02:11 -04:00
4dc1195cd8 add docs for compute fragment/atom 2017-08-20 09:41:49 -04:00
f945d4567d new USER-MESO package 2017-08-18 17:33:42 -06:00
7ddcb6812b patch 17Aug17 2017-08-17 16:02:20 -06:00
76cd61350d Merge pull request #613 from akohlmey/collected-small-changes
Collected small changes and bug fixes
2017-08-17 11:34:52 -06:00
fa3c0c61d6 Merge pull request #618 from lammps/intel
USER-INTEL add-ons from Mike
2017-08-17 11:32:53 -06:00
c46d5ff422 Merge pull request #612 from giacomofiorin/colvars-update-2017-08-10
Minor fixes to Colvars module
2017-08-17 11:32:38 -06:00
7175abcc71 flag more pair styles as supporting USER-INTEL to match newly added code 2017-08-16 13:58:46 -04:00
e34b20405c Fix a couple of typos in the docs 2017-08-15 21:10:05 -04:00
1d4d2155a2 USER-INTEL add-ons from Mike 2017-08-15 17:12:07 -06:00
cee87d7a54 update manual to point to packages.lammps.org instead of rpm.lammps.org 2017-08-15 16:19:09 -04:00
0b3f1b8a15 patch 11Aug17 2017-08-11 12:19:02 -06:00
52bec0f380 patch 10Aug17 2017-08-10 16:44:09 -06:00
c8741f3a01 remove special_bonds extra keyword and refer to read_data and create_box instead 2017-08-10 15:12:56 -04:00
da01be7c18 More robust change from initial to target restraint centers in Colvars 2017-08-10 09:22:53 -04:00
f9a515efd3 add some remarks about makefile settings on windows 2017-08-10 07:24:24 -04:00
5b55744209 fix a header line formatting issue 2017-08-10 07:21:39 -04:00
f01103dd08 correctly use the term CUDA (instead of Cuda) when not referring to the KOKKOS device flag (which is Cuda) 2017-08-09 19:08:23 -04:00
81f4d7ecb5 rework section 4 (Packages) in the manual to match Install.py scripts 2017-08-09 19:07:20 -04:00
0a54c34e34 Merge pull request #600 from akohlmey/install-and-docs-reviewed
Installation scripts and docs reviewed for release
2017-08-07 08:02:04 -06:00
e0f9a7c34c Adds BOW tutorial link in main menu 2017-08-07 00:06:53 -04:00
aaf17bde3f Added tutorial for using LAMMPS in Bash on Windows 2017-08-07 00:06:12 -04:00
5ad8a3332d Merge pull request #55 from GarrettTow/patch-1
Fixed typo in "compute_voronoi_atom.txt"
2017-08-04 19:18:57 -04:00
ca7a3a6316 Fixed typo in "compute_voronoi_atom.txt"
There was the typo "requiers" in the Restrictions section of compute_voronoi_atom.txt.
2017-08-04 17:48:27 -04:00
59ac6ef573 correct a link and a name for OpenKIM 2017-08-04 11:19:09 -04:00
2fa16bcd4c make overlapping links to references unique to avoid anchor label errors 2017-08-04 11:11:41 -04:00
96d3712817 Add missing link flag 2017-07-31 15:52:44 -06:00
b395ef00b4 Update tutorial_pylammps.txt 2017-07-31 15:50:14 -06:00
e7d9aabca6 Merge branch 'kim-install' into install-and-docs-reviewed 2017-07-28 11:25:08 -04:00
72419b6313 Merge remote-tracking branch 'github/kim-doc' into install-and-docs-reviewed 2017-07-26 19:35:15 -04:00
da7a5f55d3 Merge branch 'kim-install' into install-and-docs-reviewed 2017-07-26 19:32:55 -04:00
934cbbbeca restore lost KIM doc section in Section packages 2017-07-26 16:07:08 -06:00
a59b7e4d56 patch 24Jul17 2017-07-24 09:09:22 -06:00
3449d42267 include pair style kim doc changes that were accidentally included in PR #590 2017-07-20 17:58:49 -04:00
551001f172 revert change, that is part of the kim-install branch and changeset 2017-07-20 17:08:19 -04:00
59db5f6a17 update of Fortran-DFTB interface to be compatible with fix msst 2017-07-20 14:40:35 -06:00
3cd597e948 Merge pull request #585 from akohlmey/make-py-manual-cleanup
Make.py removal and manual cleanup
2017-07-20 12:05:04 -06:00
eca61226c2 Merge pull request #583 from giacomofiorin/colvars-update-2017-07-19
Update Colvars to version 2017-07-15 and support automated builds for it
2017-07-20 12:04:49 -06:00
fac3e3daa2 Merge pull request #581 from libAtoms/idces2quip
Modified USER-QUIP interface to pass lammps atom IDs
2017-07-20 12:04:32 -06:00