Commit Graph

8224 Commits

Author SHA1 Message Date
28d86578a3 update version strings for next patch release 2021-10-27 15:26:58 -04:00
1247f4d67b add function to print information about available compressions tools 2021-10-26 20:00:55 -04:00
f0318fb874 try to make changing LMP_INC settings less confusing to inexperienced people 2021-10-26 19:16:13 -04:00
81a5beb8cc must not have folders names differing only in case: "MC" versu "mc"
This is causing problems on MacOS and Windows with case preserving
but case insensitive file systems.
2021-10-18 18:13:21 -04:00
0e369fb9b5 update example to represent recent style changes. 2021-10-18 13:47:29 -04:00
34d54247b6 Merge branch 'develop' into collected_small_changes 2021-10-13 22:55:21 -04:00
a1572ce9a5 link with -ldl except on Windows for dlopen/dlclose/dlsym support 2021-10-13 22:47:25 -04:00
a1fb6902d5 Merge pull request #2992 from lammps/molswap
Add a new fix mol/swap command
2021-10-13 21:33:52 -04:00
c5617dc006 fix spelling and make consistent 2021-10-13 19:25:09 -04:00
69a3b5b215 move common init() code into base class. warn when used with fix efield 2021-10-13 18:54:10 -04:00
a922c91c1a document restrictions to using ReaxFF charge equilibration with fix efield 2021-10-13 18:53:09 -04:00
9cfb822847 Merge branch 'master' of github.com:lammps/lammps into acks2_release 2021-10-13 13:37:04 -06:00
a8f42bd534 tweak to atom/swap doc page 2021-10-12 11:50:04 -06:00
c22dae8d2c add a new fix 2021-10-12 11:48:26 -06:00
113c53a5da doc page for new fix mol/swap 2021-10-12 11:45:50 -06:00
9cf6b927cb Merge branch 'master' into collected-small-changes
# Conflicts:
#	src/REAXFF/fix_reaxff_species.cpp
2021-10-11 21:24:11 -04:00
96a45224de whitespace 2021-10-11 21:10:14 -04:00
27c9ba465b avoid duplication of Accelerator package info in additional doc pages 2021-10-11 16:49:59 -06:00
cb77555fa6 update title in reference to accelerator section 2021-10-11 17:26:24 -04:00
1f4c50037b Merge branch 'master' into acks2_release 2021-10-11 16:13:20 -04:00
70cbb72e42 Merge branch 'master' into acks2_release 2021-10-11 09:58:44 -04:00
0c57267a85 update branch names 2021-10-10 04:44:45 -04:00
eb6b73c752 update documentation to refer to the new branch names (develop, release) 2021-10-10 04:39:16 -04:00
09bcfc2116 document visual studio support 2021-10-08 15:33:49 -04:00
b5061b69be add warning to fix reaxff/species to explain the impact of large averaging 2021-10-07 20:46:01 -04:00
6a9bb577cf rename "zip" functions to "compress" functions. update related docs 2021-10-07 12:38:11 -04:00
059f450f1b add uppercase string utility function (for symmetry) 2021-10-07 00:00:33 -04:00
a9bccee7b2 add utility to convert a string to lowercase 2021-10-06 17:43:41 -04:00
10a8a1b325 add dlerror() call wrapper 2021-10-06 08:59:51 -04:00
6f2076a9b8 update docs 2021-10-05 22:11:19 -04:00
9f2c5116fa make lammps and msi2lmp man pages use section 1 2021-10-05 07:35:26 -04:00
dd2b5b22d4 fix saed/vtk does not use the overwrite option anywhere 2021-10-04 17:22:58 -04:00
69a8dfe4d9 whitespace 2021-10-02 18:12:32 -04:00
2dcaa47b0e unfreeze versions of python packages used to build the documentation 2021-10-02 16:55:19 -04:00
37bfe3d0ce integrate platform sub-namespace into source code and documentation
this updates function calls to functions that have been moved from
the utils namepsace or the Info class to platform::
2021-10-02 16:55:11 -04:00
373dbcd9ae fix typo 2021-10-02 16:40:05 -04:00
35bef7b1d3 unfreeze versions of python packages used to build the documentation 2021-10-02 16:32:58 -04:00
b5b2f5c03c additional tweak 2021-09-30 17:11:49 -06:00
f20bd63edf clarify doc pages for thermostatting fixes to mention regions 2021-09-30 16:55:22 -06:00
359aa1d805 Merge branch 'master' into acks2_release 2021-09-30 00:26:25 -04:00
56cd66a6c3 Merge branch 'master' into parse-logical-keyword
# Conflicts:
#	src/H5MD/dump_h5md.cpp
2021-09-29 23:05:59 -04:00
c30ba70fab Merge pull request #2957 from akohlmey/next_release_version
Step version strings for stable release
2021-09-29 20:40:00 -04:00
2651e6ec2f make C library example work with strict C compilers 2021-09-29 10:37:15 -04:00
81d3eb0b2e add missing keyword 2021-09-29 10:29:09 -04:00
c4616d4a11 Merge pull request #2962 from akohlmey/doc-updates
A few final updates to the LAMMPS manual
2021-09-27 20:39:06 -04:00
34fe792fad freeze versions of pip packages for processing the manual of the stable version
this way we avoid surprises in case one of the packages get updated
to an incompatible new version. these are know-to-work versions.
2021-09-27 18:31:46 -04:00
913ce25a01 small tweak 2021-09-27 17:13:32 -04:00
9c4a82f286 be more specific about what the name of the LAMMPS executable can be
also provide a few more examples without a machine suffix
2021-09-27 16:50:25 -04:00
9dbd5bb27d copy request to mention lammps.org form home page instructions for citing 2021-09-27 16:49:29 -04:00
7601001632 Fix Colvars output files not written with "run 0"
See:
  https://github.com/Colvars/colvars/commit/ff2f0d39ee5
which fixes a bug introduced in:
  https://github.com/Colvars/colvars/commit/1e964a542b

The message applies to NAMD, but the logic used in LAMMPS when handling "run 0" is very similar.

The Colvars version string is also updated, however this commit does not
include other changes, such as the following:
  https://github.com/Colvars/colvars/pull/419
which were not fully completed before the LAMMPS Summer 2021 finalization.
2021-09-27 13:38:30 -04:00