Commit Graph

8175 Commits

Author SHA1 Message Date
c30ba70fab Merge pull request #2957 from akohlmey/next_release_version
Step version strings for stable release
2021-09-29 20:40:00 -04:00
2651e6ec2f make C library example work with strict C compilers 2021-09-29 10:37:15 -04:00
81d3eb0b2e add missing keyword 2021-09-29 10:29:09 -04:00
c4616d4a11 Merge pull request #2962 from akohlmey/doc-updates
A few final updates to the LAMMPS manual
2021-09-27 20:39:06 -04:00
34fe792fad freeze versions of pip packages for processing the manual of the stable version
this way we avoid surprises in case one of the packages get updated
to an incompatible new version. these are know-to-work versions.
2021-09-27 18:31:46 -04:00
913ce25a01 small tweak 2021-09-27 17:13:32 -04:00
9c4a82f286 be more specific about what the name of the LAMMPS executable can be
also provide a few more examples without a machine suffix
2021-09-27 16:50:25 -04:00
9dbd5bb27d copy request to mention lammps.org form home page instructions for citing 2021-09-27 16:49:29 -04:00
7601001632 Fix Colvars output files not written with "run 0"
See:
  https://github.com/Colvars/colvars/commit/ff2f0d39ee5
which fixes a bug introduced in:
  https://github.com/Colvars/colvars/commit/1e964a542b

The message applies to NAMD, but the logic used in LAMMPS when handling "run 0" is very similar.

The Colvars version string is also updated, however this commit does not
include other changes, such as the following:
  https://github.com/Colvars/colvars/pull/419
which were not fully completed before the LAMMPS Summer 2021 finalization.
2021-09-27 13:38:30 -04:00
ea030c6dd8 Merge branch 'master' into collected-small-changes 2021-09-26 18:12:40 -04:00
184e5fd779 step version strings for stable release 2021-09-25 23:04:53 -04:00
46f331095a update some formulations as suggested by @sjplimp 2021-09-23 13:51:06 -04:00
16ab49cff4 update citation info with new LAMMPS paper reference and acknowledge it 2021-09-23 11:59:43 -04:00
5ef4913ebb Merge remote-tracking branch 'github/master' into programmer-guide-updates 2021-09-23 11:16:31 -04:00
e79ae552c8 mention how to set the path to the fftw3_omp library 2021-09-22 12:23:20 -04:00
8d8c710982 Merge pull request #2942 from akohlmey/next_patch_release
Step version strings for the next patch release
2021-09-20 20:35:23 -04:00
f340e15587 update version strings 2021-09-20 16:26:47 -04:00
c39d3057dc insert missing atom-ID 2021-09-20 16:14:18 -04:00
5ff881fb0d Change "offsite" to "external" to correct broken URLs to lammps.org 2021-09-20 12:05:52 -04:00
22d7ce564a fix typo 2021-09-20 07:29:10 -04:00
4fcf343227 fix typo 2021-09-18 21:59:31 -04:00
bca99f684f update list and order of include files from include-what-you-use analysis 2021-09-18 14:16:48 -04:00
db76edbade implement utils::current_date() convenience function to reduce replicated code 2021-09-18 09:05:35 -04:00
5c14825d69 Add stable link in docs 2021-09-16 18:13:41 -04:00
0fcc10b635 fix typo 2021-09-16 10:18:49 -04:00
fef8f51d80 refer to "XXX Coeffs" sections consistently 2021-09-15 19:20:47 -04:00
eb80102871 spelling 2021-09-15 13:51:31 -04:00
c1fa663dd8 Try to improve the pair style hybrid docs
This specifically tries to avoid the ambiguous use of "mixing" and
clarify that similar is still different when pair styles are concerned.
See discussion here: https://matsci.org/t/confusion-about-mixing-and-pair-coeff-section/38317/3
2021-09-15 13:48:47 -04:00
80f95e5087 step version strings for next patch release 2021-09-13 07:33:34 -04:00
02da29513e Merge branch 'master' into programmer-guide-updates
# Conflicts:
#	doc/lammps.1
2021-09-09 23:34:46 -04:00
e2b44e89a7 Merge pull request #2927 from akohlmey/docs-update
Update documentation for the stable release
2021-09-09 23:03:12 -04:00
c1dbc110d9 cosmetic changes for consistency 2021-09-07 19:12:59 -04:00
36eb2e30df correct URL 2021-09-07 19:12:27 -04:00
a4735628f9 document flags that were missing in the man page and the help message 2021-09-07 19:11:51 -04:00
ad39aa85ab update style guide and requirements/suggestions for contributions 2021-09-07 19:09:35 -04:00
1ae15cf8b7 Merge branch 'master' into programmer-guide-updates 2021-09-07 19:01:21 -04:00
3562c76a66 Update compute angle doc page 2021-09-07 19:00:22 -04:00
a16fd25840 minor tweak 2021-09-07 14:26:19 -04:00
55a802afe3 Merge remote-tracking branch 'github/master' into collected-small-changes 2021-09-07 14:20:53 -04:00
19e6a9e0d8 Merge pull request #2924 from ohenrich/cg-dna
CG-DNA: Documentation Update
2021-09-07 14:12:07 -04:00
909376b14b Merge branch 'master' into collected-small-changes 2021-09-07 13:32:21 -04:00
9a8a4a111f include utils::binary_search in docs 2021-09-06 18:16:07 -04:00
31a8940ae8 use larger version of FFT grid comm image 2021-09-06 15:50:02 -04:00
bb8b0ef157 add section on PPPM 2021-09-06 12:23:49 -04:00
c1599ffb3e spelling 2021-09-06 09:52:32 -04:00
d8ba7a3e9a add discussion of OpenMP parallelization 2021-09-06 09:52:19 -04:00
bb0188ac1a Corrected linking errors 2021-09-06 13:29:40 +01:00
57cea77fe9 Updated online docu 2021-09-06 11:38:21 +01:00
b132a7eb3a Updated docu to new oxdna atom_style 2021-09-06 09:47:46 +01:00
6e17446f38 add section about parallelization in the OPENMP package 2021-09-05 22:42:42 -04:00