Commit Graph

5579 Commits

Author SHA1 Message Date
9159a43d5d Merge pull request #1737 from akohlmey/next_patch_release
Step version string for next patch release
2019-10-30 17:47:10 -04:00
a0d74ca2ae Bug fix for gay-berne potential when mu != 1.0. 2019-10-27 22:31:00 -07:00
b3dbf7925a print warning when GPU pair style increases the communication cutoff 2019-10-26 05:15:58 -04:00
22288e06b7 Merge branch 'master' into fix-compiler-warnings 2019-10-25 14:07:50 -04:00
33b14891ab Merge pull request #1730 from ohenrich/user-cgdna
USER-CGDNA quasi-unique base pairing
2019-10-25 13:45:29 -04:00
9ecbaf0407 Merge pull request #1732 from wmbrownIntel/doc-gayberne-update
Fixing Gay-Berne "extra" documentation to define epsilon parameters c…
2019-10-25 13:43:40 -04:00
cac57ec7e0 Move release date ahead by another week to 30 October 2019 2019-10-22 16:48:39 +02:00
57da9d177f step version string for next patch release 2019-10-21 04:02:08 -04:00
e44402326f doc typo 2019-10-20 13:21:20 -06:00
a69bd0405a add lowercase 'arrhenius' keyword to spellcheck 2019-10-19 23:09:10 -06:00
d429143589 bond/react: Arrhenius constraint 2019-10-19 22:15:52 -06:00
30cff3faf3 Fixing Gay-Berne "extra" documentation to define epsilon parameters consistent with LAMMPS input. 2019-10-18 03:10:31 -07:00
bb21847f8a have sphinx configuration switch math formula renderer for epub
this still needs work, that has to be done after we switched to RST
2019-10-18 04:47:18 -04:00
c578e4e7fc Enable COLVARS_LEPTON for make, update build doc for USER-COLVARS 2019-10-17 22:48:57 -04:00
c6f637f78f Merge branch 'master' into user-cgdna 2019-10-17 18:40:50 +01:00
68dc2a7966 Added description of quasi-unique base pairing 2019-10-17 16:06:06 +01:00
68adc56e93 Merge branch 'master' into fix-compiler-warnings 2019-10-17 06:03:59 -04:00
e4c77f047f document COLVARS_LEPTON flag to CMake configuration 2019-10-16 16:19:12 -04:00
4e6f83ced2 Merge pull request #1726 from akohlmey/singularity
Add Singularity definition files suitable for compiling and debugging LAMMPS
2019-10-16 21:12:22 +02:00
10031e91bd Update false_positives.txt
Added the name of Mattice in the list
2019-10-16 20:25:53 +02:00
38c819c281 Update compute_gyration_shape.txt
Addition of a textbook where the computed quantities are presented in more detail
2019-10-16 20:12:46 +02:00
45e8a41704 document support for r-RESPA in pair style zero 2019-10-15 17:34:37 -04:00
f3b2ec80af add false positives and correct spelling to have a clean spellcheck run on centos 7 2019-10-15 16:56:23 +02:00
faf5ded721 fix formatting and include example for setting compiler flags to enable C++11 2019-10-15 16:55:51 +02:00
e4bbfc992b Singularity definition files for compiling LAMMPS 2019-10-15 16:22:08 +02:00
29574eaa45 added "likewise" as suggested by @sjplimp 2019-10-11 17:19:47 +02:00
da56c7fc66 document freshly added warnings in header and manual 2019-10-11 16:47:35 +02:00
6e244bc8dc Merge pull request #1631 from jibril-b-coulibaly/patch-2
Bug fixes for pair style granular
2019-10-09 14:14:48 +02:00
945f903683 added an examples/UNITS dir 2019-10-08 18:02:21 -06:00
e77e286d95 Merge pull request #1707 from charlessievers/lammps_gjf
Lammps gjf small updates
2019-10-08 23:06:36 +02:00
0e10fbb133 Merge pull request #1690 from charlessievers/third_order
Added third order, added documentation, took out extraneous lines, ad…
2019-10-08 21:57:15 +02:00
9b15f4e2dc Added the change to langevin gjf documentation 2019-10-08 12:47:30 -07:00
4f57332a89 Merge pull request #1706 from TOFarmer/create_bonds_improper
Add single/improper to create_bonds
2019-10-08 21:40:31 +02:00
ac8f2e431e fix a few cut-n-paste issues 2019-10-08 14:49:20 +02:00
cf11e4be3c Added documentation for single/improper 2019-10-08 11:51:19 +01:00
8c063343a1 Merge branch 'master' into collected-small-changes 2019-10-07 18:54:33 +02:00
ed467d8867 Merge branch 'master' of github.com:alxvov/lammps into OSO
- solved conflict in doc/src/fix_nve_spin.txt
2019-10-04 08:56:49 -06:00
ed5678d646 Merge pull request #1673 from charlessievers/lammps_gjf
Lammps fix langevin updates for gjf option
2019-10-04 10:02:46 +02:00
a102d2343e Merge pull request #1692 from julient31/restart-correction
Bug correction in the SPIN package, and fix nve/spin option modification
2019-10-04 09:55:40 +02:00
747bfa31f2 apply changes suggested by Andrew Santos 2019-10-03 18:31:42 +02:00
bb4dc59803 fix typo 2019-09-30 16:33:07 -04:00
6cd460072b add docs for dump_modify time yes. consolidate keywords 2019-09-30 11:01:41 -04:00
fc10817950 Merge remote-tracking branch 'origin/OSO' into OSO 2019-09-30 14:55:45 +00:00
14933958f7 change units 2019-09-30 14:55:33 +00:00
23040a98f8 adds an angle constraint option for reacting molecules
also, previously, reaction templates had to contain more than two atoms
2019-09-28 23:10:34 -06:00
5927f056c5 Removed redundant and out of scope gjf info from fix_langevin.txt 2019-09-25 17:22:15 -07:00
b771225f3d Edit gjf option syntax within fix_langevin.txt 2019-09-25 17:19:27 -07:00
a5db0463ec list lines in doc source files with non-ASCII characters 2019-09-25 13:36:57 -04:00
107369518e replace non-ASCII characters with their ASCII equivalents
# Conflicts:
#	doc/src/fix_wall_stochastic.txt
2019-09-25 13:36:18 -04:00
a6a78208aa Commit3 JT 092419
- modified other doc files
2019-09-24 16:01:37 -06:00