/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "stdlib.h" #include "string.h" #include "fix_wall_reflect.h" #include "atom.h" #include "comm.h" #include "modify.h" #include "domain.h" #include "lattice.h" #include "input.h" #include "variable.h" #include "error.h" using namespace LAMMPS_NS; enum{NONE,EDGE,CONSTANT,VARIABLE}; /* ---------------------------------------------------------------------- */ FixWallReflect::FixWallReflect(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { if (narg < 4) error->all("Illegal fix wall/reflect command"); xloflag = xhiflag = yloflag = yhiflag = zloflag = zhiflag = NONE; xlostr = xhistr = ylostr = yhistr = zlostr = zhistr = NULL; int scaleflag = 1; int iarg = 3; while (iarg < narg) { if (strcmp(arg[iarg],"xlo") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall/reflect command"); if (strcmp(arg[iarg+1],"EDGE") == 0) { xloflag = EDGE; xlo = domain->boxlo[0]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { xloflag = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; xlostr = new char[n]; strcpy(xlostr,&arg[iarg+1][2]); } else { xloflag = CONSTANT; xlo = atof(arg[iarg+1]); } iarg += 2; } else if (strcmp(arg[iarg],"xhi") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall/reflect command"); if (strcmp(arg[iarg+1],"EDGE") == 0) { xhiflag = EDGE; xhi = domain->boxhi[0]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { xhiflag = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; xhistr = new char[n]; strcpy(xhistr,&arg[iarg+1][2]); } else { xhiflag = CONSTANT; xhi = atof(arg[iarg+1]); } iarg += 2; } else if (strcmp(arg[iarg],"ylo") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall/reflect command"); if (strcmp(arg[iarg+1],"EDGE") == 0) { yloflag = EDGE; ylo = domain->boxlo[1]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { yloflag = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; ylostr = new char[n]; strcpy(ylostr,&arg[iarg+1][2]); } else { yloflag = CONSTANT; ylo = atof(arg[iarg+1]); } iarg += 2; } else if (strcmp(arg[iarg],"yhi") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall/reflect command"); if (strcmp(arg[iarg+1],"EDGE") == 0) { yhiflag = EDGE; yhi = domain->boxhi[1]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { yhiflag = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; yhistr = new char[n]; strcpy(yhistr,&arg[iarg+1][2]); } else { yhiflag = CONSTANT; yhi = atof(arg[iarg+1]); } iarg += 2; } else if (strcmp(arg[iarg],"zlo") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall/reflect command"); if (strcmp(arg[iarg+1],"EDGE") == 0) { zloflag = EDGE; zlo = domain->boxlo[2]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { zloflag = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; zlostr = new char[n]; strcpy(zlostr,&arg[iarg+1][2]); } else { zloflag = CONSTANT; zlo = atof(arg[iarg+1]); } iarg += 2; } else if (strcmp(arg[iarg],"zhi") == 0) { if (iarg+2 > narg) error->all("Illegal fix wall/reflect command"); if (strcmp(arg[iarg+1],"EDGE") == 0) { zhiflag = EDGE; zhi = domain->boxhi[2]; } else if (strstr(arg[iarg+1],"v_") == arg[iarg+1]) { zhiflag = VARIABLE; int n = strlen(&arg[iarg+1][2]) + 1; zhistr = new char[n]; strcpy(zhistr,&arg[iarg+1][2]); } else { zhiflag = CONSTANT; zhi = atof(arg[iarg+1]); } iarg += 2; } else if (strcmp(arg[iarg],"units") == 0) { if (iarg+2 > narg) error->all("Illegal wall/reflect command"); if (strcmp(arg[iarg+1],"box") == 0) scaleflag = 0; else if (strcmp(arg[iarg+1],"lattice") == 0) scaleflag = 1; else error->all("Illegal fix wall/reflect command"); iarg += 2; } else error->all("Illegal fix wall/reflect command"); } // setup scaling if any wall positions were set as CONSTANT // apply scaling factors to wall positions if (xloflag == CONSTANT || xhiflag == CONSTANT || yloflag == CONSTANT || yhiflag == CONSTANT || zloflag == CONSTANT || zhiflag == CONSTANT) { if (scaleflag && domain->lattice == NULL) error->all("Use of fix wall/reflect with undefined lattice"); double xscale,yscale,zscale; if (scaleflag) { xscale = domain->lattice->xlattice; yscale = domain->lattice->ylattice; zscale = domain->lattice->zlattice; } else xscale = yscale = zscale = 1.0; if (xloflag == CONSTANT) xlo *= xscale; if (xhiflag == CONSTANT) xhi *= xscale; if (yloflag == CONSTANT) ylo *= xscale; if (yhiflag == CONSTANT) yhi *= xscale; if (zloflag == CONSTANT) zlo *= xscale; if (zhiflag == CONSTANT) zhi *= xscale; } // error checks if (!xloflag && !xhiflag && !yloflag && !yhiflag && !zloflag && !zhiflag) error->all("Illegal fix wall/reflect command"); if ((xloflag || xhiflag) && domain->xperiodic) error->all("Cannot use wall in periodic dimension"); if ((yloflag || yhiflag) && domain->yperiodic) error->all("Cannot use wall in periodic dimension"); if ((zloflag || zhiflag) && domain->zperiodic) error->all("Cannot use wall in periodic dimension"); } /* ---------------------------------------------------------------------- */ FixWallReflect::~FixWallReflect() { delete [] xlostr; delete [] xhistr; delete [] ylostr; delete [] yhistr; delete [] zlostr; delete [] zhistr; } /* ---------------------------------------------------------------------- */ int FixWallReflect::setmask() { int mask = 0; mask |= POST_INTEGRATE; mask |= POST_INTEGRATE_RESPA; return mask; } /* ---------------------------------------------------------------------- */ void FixWallReflect::init() { if (xlostr) { xlovar = input->variable->find(xlostr); if (xlovar < 0) error->all("Variable name for fix wall/relect does not exist"); if (!input->variable->equalstyle(xlovar)) error->all("Variable for fix wall/reflect is not equal style"); } if (xhistr) { xhivar = input->variable->find(xhistr); if (xhivar < 0) error->all("Variable name for fix wall/relect does not exist"); if (!input->variable->equalstyle(xhivar)) error->all("Variable for fix wall/reflect is not equal style"); } if (ylostr) { ylovar = input->variable->find(ylostr); if (ylovar < 0) error->all("Variable name for fix wall/relect does not exist"); if (!input->variable->equalstyle(ylovar)) error->all("Variable for fix wall/reflect is not equal style"); } if (yhistr) { yhivar = input->variable->find(yhistr); if (yhivar < 0) error->all("Variable name for fix wall/relect does not exist"); if (!input->variable->equalstyle(yhivar)) error->all("Variable for fix wall/reflect is not equal style"); } if (zlostr) { zlovar = input->variable->find(zlostr); if (zlovar < 0) error->all("Variable name for fix wall/relect does not exist"); if (!input->variable->equalstyle(zlovar)) error->all("Variable for fix wall/reflect is not equal style"); } if (zhistr) { zhivar = input->variable->find(zhistr); if (zhivar < 0) error->all("Variable name for fix wall/relect does not exist"); if (!input->variable->equalstyle(zhivar)) error->all("Variable for fix wall/reflect is not equal style"); } int nrigid = 0; for (int i = 0; i < modify->nfix; i++) if (modify->fix[i]->rigid_flag) nrigid++; if (nrigid && comm->me == 0) error->warning("Should not allow rigid bodies to bounce off " "relecting walls"); } /* ---------------------------------------------------------------------- */ void FixWallReflect::post_integrate() { if (xloflag == VARIABLE) xlo = input->variable->compute_equal(xlovar); if (xhiflag == VARIABLE) xhi = input->variable->compute_equal(xhivar); if (yloflag == VARIABLE) ylo = input->variable->compute_equal(ylovar); if (yhiflag == VARIABLE) yhi = input->variable->compute_equal(yhivar); if (zloflag == VARIABLE) zlo = input->variable->compute_equal(zlovar); if (zhiflag == VARIABLE) zhi = input->variable->compute_equal(zhivar); double **x = atom->x; double **v = atom->v; int *mask = atom->mask; int nlocal = atom->nlocal; for (int i = 0; i < nlocal; i++) { if (mask[i] & groupbit) { if (xloflag && x[i][0] < xlo) { x[i][0] = xlo + (xlo - x[i][0]); v[i][0] = -v[i][0]; } if (xhiflag && x[i][0] > xhi) { x[i][0] = xhi - (x[i][0] - xhi); v[i][0] = -v[i][0]; } if (yloflag && x[i][1] < ylo) { x[i][1] = ylo + (ylo - x[i][1]); v[i][1] = -v[i][1]; } if (yhiflag && x[i][1] > yhi) { x[i][1] = yhi - (x[i][1] - yhi); v[i][1] = -v[i][1]; } if (zloflag && x[i][2] < zlo) { x[i][2] = zlo + (zlo - x[i][2]); v[i][2] = -v[i][2]; } if (zhiflag && x[i][2] > zhi) { x[i][2] = zhi - (x[i][2] - zhi); v[i][2] = -v[i][2]; } } } }