import sys,os,unittest from lammps import lammps, LMP_STYLE_GLOBAL, LMP_STYLE_LOCAL, LMP_STYLE_ATOM, LMP_TYPE_VECTOR, LMP_TYPE_SCALAR, LMP_TYPE_ARRAY from ctypes import c_void_p class PythonNumpy(unittest.TestCase): def setUp(self): machine = None if 'LAMMPS_MACHINE_NAME' in os.environ: machine=os.environ['LAMMPS_MACHINE_NAME'] self.lmp = lammps(name=machine, cmdargs=['-nocite', '-log','none', '-echo','screen']) def tearDown(self): del self.lmp def testLammpsPointer(self): self.assertEqual(type(self.lmp.lmp), c_void_p) def testExtractComputeGlobalScalar(self): # TODO pass def testExtractComputeGlobalVector(self): self.lmp.command("region box block 0 2 0 2 0 2") self.lmp.command("create_box 1 box") self.lmp.command("create_atoms 1 single 1.0 1.0 1.0") self.lmp.command("create_atoms 1 single 1.0 1.0 1.5") self.lmp.command("compute coordsum all reduce sum x y z") natoms = int(self.lmp.get_natoms()) self.assertEqual(natoms,2) values = self.lmp.numpy.extract_compute("coordsum", LMP_STYLE_GLOBAL, LMP_TYPE_VECTOR) self.assertEqual(len(values), 3) self.assertEqual(values[0], 2.0) self.assertEqual(values[1], 2.0) self.assertEqual(values[2], 2.5) def testExtractComputeGlobalArray(self): # TODO pass def testExtractComputePerAtomVector(self): self.lmp.command("region box block 0 2 0 2 0 2") self.lmp.command("create_box 1 box") self.lmp.command("create_atoms 1 single 1.0 1.0 1.0") self.lmp.command("create_atoms 1 single 1.0 1.0 1.5") self.lmp.command("compute ke all ke/atom") natoms = int(self.lmp.get_natoms()) self.assertEqual(natoms,2) values = self.lmp.numpy.extract_compute("ke", LMP_STYLE_ATOM, LMP_TYPE_VECTOR) self.assertEqual(len(values), 2) self.assertEqual(values[0], 0.0) self.assertEqual(values[1], 0.0) def testExtractComputePerAtomArray(self): # TODO pass def testExtractComputeLocalScalar(self): # TODO pass def testExtractComputeLocalVector(self): # TODO pass def testExtractComputeLocalArray(self): # TODO pass if __name__ == "__main__": unittest.main()